SMTL ID : 4i9y.2 (5 other biounits)

Structure of the C-terminal domain of Nup358

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: R.58, F.63, V.64, Q.66, A.104, N.105, V.116, H.124, L.125, H.129 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.58, A:R.58 GOL.2: 4 residues within 4Å: Chain A: F.91, D.92, K.94, F.127 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.92, A:D.92, A:K.94 Water bridges: A:F.91 GOL.3: 3 residues within 4Å: Chain A: K.47, G.48, F.49 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.48 GOL.4: 4 residues within 4Å: Chain A: G.1, H.3, T.5, N.30 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.5, A:N.30 GOL.7: 5 residues within 4Å: Chain A: P.2, H.3, M.4, E.26, F.134 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.3 Water bridges: A:M.4, A:K.136, A:K.136

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: H.3, M.4 Ligand excluded by PLIP

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.6: 6 residues within 4Å: Chain A: G.1, P.2, F.28, I.31, V.93, L.100 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, D.H. et al., Structural and Functional Analysis of the C-Terminal Domain of Nup358/RanBP2. J.Mol.Biol. (2013)

Release Date

2013-01-30

Peptides

E3 SUMO-protein ligase RanBP2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 SUMO-protein ligase RanBP2

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