SMTL ID : 4iab.1 (3 other biounits)

Crystal structure of a putative monosaccharide binding protein (BACUNI_03039) from Bacteroides uniformis ATCC 8492 at 1.70 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-tetramer

Ligands

4 x UNL: UNKNOWN LIGAND

UNL.1: 13 residues within 4Å: Chain A: K.39, N.49, E.76, I.78, N.81, H.83, L.84, L.87, N.92, Y.108, E.125, W.127 Chain B: R.142 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:K.39, A:N.49, A:E.76, A:E.76, A:E.76, A:N.81, A:H.83, A:N.92, B:R.142, B:R.142 UNL.3: 13 residues within 4Å: Chain A: R.142 Chain B: K.39, N.49, E.76, N.81, H.83, L.84, L.87, N.92, L.94, Y.108, E.125, W.127 11 PLIP interactions: 9 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:K.39, B:N.49, B:N.81, B:N.81, B:N.92, B:Y.108, B:E.125, B:E.125, A:R.142, A:R.142 Water bridges: B:E.125 UNL.7: 13 residues within 4Å: Chain C: K.39, N.49, E.76, I.78, N.81, H.83, L.84, L.87, N.92, Y.108, E.125, W.127 Chain D: R.142 10 PLIP interactions: 8 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:K.39, C:N.49, C:E.76, C:E.76, C:N.81, C:H.83, C:N.92, C:Y.108, D:R.142, D:R.142 UNL.9: 13 residues within 4Å: Chain C: R.142 Chain D: K.39, N.49, E.76, N.81, H.83, L.84, L.87, N.92, L.94, Y.108, E.125, W.127 11 PLIP interactions: 2 interactions with chain C, 9 interactions with chain D Hydrogen bonds: C:R.142, C:R.142, D:K.39, D:N.49, D:N.81, D:N.81, D:H.83, D:N.92, D:E.125 Water bridges: D:Y.108, D:E.125

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: K.107, W.122, H.124 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.107 Water bridges: A:E.95, A:K.107 GOL.8: 3 residues within 4Å: Chain C: K.107, W.122, H.124 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.107 Water bridges: C:E.95, C:K.107

6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 5 residues within 4Å: Chain A: V.48, I.60, Y.63 Chain B: G.131, M.132 No protein-ligand interaction detected (PLIP) PEG.5: 4 residues within 4Å: Chain B: R.46, V.48, I.60, Y.63 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.46 PEG.6: 5 residues within 4Å: Chain B: E.97, I.98, G.99, V.103, Y.105 2 PLIP interactions: 2 interactions with chain B Water bridges: B:V.103, B:Y.105 PEG.10: 5 residues within 4Å: Chain C: V.48, I.60, Y.63 Chain D: G.131, M.132 No protein-ligand interaction detected (PLIP) PEG.11: 4 residues within 4Å: Chain D: R.46, V.48, I.60, Y.63 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.46 PEG.12: 5 residues within 4Å: Chain D: E.97, I.98, G.99, V.103, Y.105 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:E.97 Water bridges: D:G.99, D:V.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a hypothetical protein (BACUNI_03039) from Bacteroides uniformis ATCC 8492 at 1.66 A resolution. To be published

Release Date

2013-02-27

Peptides

hypothetical protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

hypothetical protein

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