SMTL ID : 4iei.1

Crystal Structure of the large terminase subunit gp2 of bacterial virus Sf6 complexed with ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 12 residues within 4Å: Chain A: G.43, R.44, G.45, S.46, G.47, K.48, S.49, W.50, N.197, H.199, P.201, L.204 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:G.45, A:S.46, A:G.47, A:K.48, A:S.49, A:W.50, A:N.197 Water bridges: A:N.25, A:N.25, A:K.48, A:K.48, A:S.49, A:S.49, A:W.50 Salt bridges: A:K.48 pi-Stacking: A:W.50, A:W.50, A:W.50, A:H.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, H. et al., Structures of the phage Sf6 large terminase provide new insights into DNA translocation and cleavage. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-05-01

Peptides

Gene 2 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Gene 2 protein

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