SMTL ID : 4if6.1

Structure of NAD-dependent protein deacetylase sirtuin-1 (closed state, 2.25 A)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 8 residues within 4Å: Chain A: C.142, I.144, C.145, Y.147, C.166, R.168, C.169, A.176 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.142, A:C.145, A:C.166, A:C.169

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.2: 26 residues within 4Å: Chain A: G.32, A.33, G.34, V.37, S.38, D.43, F.44, R.45, S.46, Y.51, Q.116, H.134, F.185, G.211, S.212, S.213, L.214, V.216, I.235, N.236, R.237, E.238, G.251, D.252, C.253, D.254 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:A.33, A:G.34, A:F.44, A:R.45, A:R.45, A:Y.51, A:H.134, A:S.212, A:S.213, A:S.213, A:N.236, A:N.236, A:R.237, A:D.252, A:C.253 Water bridges: A:G.34, A:S.38, A:S.46, A:Q.116, A:D.254 Salt bridges: A:R.45, A:R.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davenport, A.M. et al., Structure of a nucleoporin complex. To be Published

Release Date

2013-10-23

Peptides

NAD-dependent protein deacetylase sirtuin-1: A
NAD-dependent protein deacetylase sirtuin-1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NAD-dependent protein deacetylase sirtuin-1

NAD-dependent protein deacetylase sirtuin-1

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