SMTL ID : 4kxq.1

Structure of NAD-dependent protein deacetylase sirtuin-1 (closed state, 1.85 A)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 8 residues within 4Å: Chain A: C.142, I.144, C.145, Y.147, C.166, R.168, C.169, A.176 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.142, A:C.145, A:C.166, A:C.169

1 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.2: 26 residues within 4Å: Chain A: G.32, A.33, G.34, V.37, S.38, D.43, F.44, R.45, S.46, Y.51, Q.116, H.134, F.185, G.211, S.212, S.213, L.214, V.216, I.235, N.236, R.237, E.238, G.251, D.252, C.253, D.254 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:A.33, A:G.34, A:F.44, A:R.45, A:R.45, A:Y.51, A:H.134, A:S.212, A:S.213, A:S.213, A:N.236, A:R.237, A:E.238, A:C.253 Water bridges: A:S.38, A:S.46, A:Q.116, A:V.183, A:R.237, A:R.237, A:D.252, A:D.254 Salt bridges: A:R.45, A:R.45

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.3: 7 residues within 4Å: Chain A: K.25, K.26, G.108, K.109, L.110, L.111, R.129 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.110

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 10 residues within 4Å: Chain A: I.41, F.44, I.50, I.87, Y.88, P.89, Q.116, N.117, I.118, D.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.87, A:I.118, A:D.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davenport, A.M. et al., Structural and Functional Analysis of Human SIRT1. J.Mol.Biol. (2014)

Release Date

2013-10-23

Peptides

NAD-dependent protein deacetylase sirtuin-1: A
NAD-dependent protein deacetylase sirtuin-1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NAD-dependent protein deacetylase sirtuin-1

NAD-dependent protein deacetylase sirtuin-1

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