SMTL ID : 4ihf.1 (2 other biounits)

Chasing Acyl Carrier Protein Through a Catalytic Cycle of Lipid A Production

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-oligomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

3 x 1F7: S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] (3R)-3-hydroxytetradecanethioate(Covalent)

1F7.2: 20 residues within 4Å: Chain A: D.239, G.258, G.276, T.293, G.294 Chain B: F.190, Q.243, A.245, I.261, A.263, G.264, V.279, N.281, M.297, V.298, M.299 Chain C: N.317, W.320, R.321 Chain D: S.39 21 PLIP interactions: 15 interactions with chain B, 2 interactions with chain D, 2 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: B:F.190, B:I.261, B:A.263, B:V.279, B:N.281, B:M.299, A:T.293 Hydrogen bonds: B:D.223, B:D.223, B:Q.243, B:G.264, B:N.281, D:S.39, C:N.317 Water bridges: B:F.190, B:N.281, B:N.281, B:G.282, D:S.39, A:G.294 Salt bridges: C:R.321 1F7.3: 23 residues within 4Å: Chain A: F.190, Q.243, A.245, I.261, A.263, G.264, V.279, I.280, N.281, M.297, V.298, M.299 Chain B: N.317, W.320, R.321 Chain C: D.239, A.257, G.258, G.275, G.276, T.293, G.294 Chain E: S.39 13 PLIP interactions: 2 interactions with chain C, 9 interactions with chain A, 2 interactions with chain B Hydrogen bonds: C:G.276, C:G.294, A:Q.243, A:G.264, B:N.317 Hydrophobic interactions: A:F.190, A:I.261, A:V.279 Water bridges: A:F.190, A:D.223, A:N.281, A:N.281 Salt bridges: B:R.321 1F7.4: 21 residues within 4Å: Chain A: N.317, W.320, R.321 Chain B: D.239, A.257, G.258, G.275, G.276, T.293, G.294 Chain C: F.190, Q.243, A.245, I.261, A.263, G.264, V.279, N.281, M.297, M.299 Chain F: S.39 15 PLIP interactions: 11 interactions with chain C, 2 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: C:F.190, C:A.263, C:V.279, C:N.281, C:M.299 Hydrogen bonds: C:Q.243, C:G.264, C:N.281, B:G.276, B:G.294, A:N.317 Water bridges: C:F.190, C:D.223, C:N.281 Salt bridges: A:R.321

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Masoudi, A. et al., Chasing acyl carrier protein through a catalytic cycle of lipid A production. Nature (2014)

Release Date

2013-11-13

Peptides

UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase: ABC
Acyl carrier protein: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

D
G

E
H

F
K

UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase

Acyl carrier protein

Related Entries With Identical Sequence