SMTL ID : 4ijc.1

Crystal structure of arabinose dehydrogenase Ara1 from Saccharomyces cerevisiae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.241, S.245, R.285 Ligands: SO4.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.245 Water bridges: A:R.285 Salt bridges: A:R.285 SO4.2: 8 residues within 4Å: Chain A: S.241, P.242, L.243, G.244, S.245, P.284, R.285 Ligands: SO4.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.241, A:L.243, A:G.244, A:S.245, A:R.285, A:R.285 SO4.4: 8 residues within 4Å: Chain B: S.241, P.242, L.243, G.244, S.245, P.284, R.285 Ligands: SO4.5 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.241, B:L.243, B:G.244, B:S.245, B:R.285, B:R.285 SO4.5: 6 residues within 4Å: Chain B: S.241, S.245, H.246, R.285, I.321 Ligands: SO4.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.245 Salt bridges: B:R.285

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: V.31, R.187 Chain B: K.91 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, X.Q. et al., Structures of Saccharomyces cerevisiaeD-arabinose dehydrogenase Ara1 and its complex with NADPH: implications for cofactor-assisted substrate recognition. Acta Crystallogr.,Sect.F (2013)

Release Date

2013-11-27

Peptides

D-arabinose dehydrogenase [NAD(P)+] heavy chain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D-arabinose dehydrogenase [NAD(P)+] heavy chain

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