SMTL ID : 4ijr.1

Crystal structure of Saccharomyces cerevisiae arabinose dehydrogenase Ara1 complexed with NADPH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 26 residues within 4Å: Chain A: G.39, T.40, A.41, D.66, Y.71, H.131, W.132, S.192, N.193, Q.214, Y.240, S.241, P.242, L.243, G.244, S.245, A.248, L.251, N.268, I.283, P.284, R.285, S.286, L.287, N.288, R.291 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:T.40, A:A.41, A:D.66, A:S.192, A:N.193, A:Q.214, A:S.241, A:L.243, A:G.244, A:S.245, A:S.245, A:A.248, A:N.268, A:N.268, A:R.285, A:R.285, A:R.285, A:S.286, A:L.287, A:N.288, A:R.291 Water bridges: A:Y.71 Salt bridges: A:R.285, A:R.291 pi-Stacking: A:Y.240 pi-Cation interactions: A:R.291 NDP.2: 26 residues within 4Å: Chain B: G.39, T.40, A.41, D.66, Y.71, H.131, W.132, S.192, N.193, Q.214, Y.240, S.241, P.242, L.243, G.244, S.245, A.248, L.251, N.268, I.283, P.284, R.285, S.286, L.287, N.288, R.291 29 PLIP interactions: 29 interactions with chain B Hydrogen bonds: B:T.40, B:A.41, B:D.66, B:D.66, B:Y.71, B:S.192, B:N.193, B:Q.214, B:S.241, B:L.243, B:G.244, B:S.245, B:S.245, B:A.248, B:N.268, B:N.268, B:R.285, B:R.285, B:R.285, B:S.286, B:L.287, B:N.288, B:R.291 Water bridges: B:R.291, B:R.291 Salt bridges: B:R.285, B:R.291 pi-Stacking: B:Y.240 pi-Cation interactions: B:R.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, X.Q. et al., Structures of Saccharomyces cerevisiaeD-arabinose dehydrogenase Ara1 and its complex with NADPH: implications for cofactor-assisted substrate recognition. Acta Crystallogr.,Sect.F (2013)

Release Date

2013-11-27

Peptides

D-arabinose dehydrogenase [NAD(P)+] heavy chain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

D-arabinose dehydrogenase [NAD(P)+] heavy chain

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