SMTL ID : 4ijd.1 (1 other biounit)

Crystal structure of methyltransferase domain of human PR domain-containing protein 9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.11, C.14, C.22, H.25 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.14, A:C.22, A:H.25 ZN.2: 4 residues within 4Å: Chain A: C.196, C.199, H.212, H.217 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.196, A:C.199, A:H.212, A:H.217

16 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.4: 1 residues within 4Å: Chain A: P.155 Ligand excluded by PLIP UNX.5: 3 residues within 4Å: Chain A: Y.82, G.96, Y.97 Ligand excluded by PLIP UNX.6: 3 residues within 4Å: Chain A: V.36, D.37, H.40 Ligand excluded by PLIP UNX.7: 1 residues within 4Å: Chain A: P.50 Ligand excluded by PLIP UNX.8: 1 residues within 4Å: Chain A: R.105 Ligand excluded by PLIP UNX.9: 2 residues within 4Å: Chain A: C.199, C.200 Ligand excluded by PLIP UNX.10: 3 residues within 4Å: Chain A: A.202, F.203, S.204 Ligand excluded by PLIP UNX.11: 3 residues within 4Å: Chain A: K.32, D.33, G.80 Ligand excluded by PLIP UNX.12: 1 residues within 4Å: Chain A: P.74 Ligand excluded by PLIP UNX.13: 4 residues within 4Å: Chain A: Y.10, E.12, V.137, R.148 Ligand excluded by PLIP UNX.14: 3 residues within 4Å: Chain A: Y.167, G.168, Q.169 Ligand excluded by PLIP UNX.15: 1 residues within 4Å: Chain A: C.11 Ligand excluded by PLIP UNX.16: 2 residues within 4Å: Chain A: P.56, S.57 Ligand excluded by PLIP UNX.17: 1 residues within 4Å: Chain A: K.116 Ligand excluded by PLIP UNX.18: 2 residues within 4Å: Chain A: E.192, S.205 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dombrovski, L. et al., Crystal structure of methyltransferase domain of human PR domain-containing protein 9. To be Published

Release Date

2013-02-13

Peptides

Histone-lysine N-methyltransferase PRDM9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase PRDM9

Related Entries With Identical Sequence