SMTL ID : 4ijd.2 (1 other biounit)

Crystal structure of methyltransferase domain of human PR domain-containing protein 9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.11, C.14, C.22, A.24, H.25 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.11, A:C.14, A:C.22, A:H.25 ZN.2: 4 residues within 4Å: Chain A: C.196, C.199, H.212, H.217 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.196, A:C.199, A:H.212, A:H.217

8 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 2 residues within 4Å: Chain A: V.152, I.193 No protein-ligand interaction detected (PLIP) UNX.4: 1 residues within 4Å: Chain A: P.50 No protein-ligand interaction detected (PLIP) UNX.5: 1 residues within 4Å: Chain A: P.74 No protein-ligand interaction detected (PLIP) UNX.6: 3 residues within 4Å: Chain A: D.131, F.203, S.204 No protein-ligand interaction detected (PLIP) UNX.7: 1 residues within 4Å: Chain A: H.142 No protein-ligand interaction detected (PLIP) UNX.8: 2 residues within 4Å: Chain A: F.18, P.28 No protein-ligand interaction detected (PLIP) UNX.9: 1 residues within 4Å: Chain A: F.30 No protein-ligand interaction detected (PLIP) UNX.10: 2 residues within 4Å: Chain A: W.162, Y.163 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dombrovski, L. et al., Crystal structure of methyltransferase domain of human PR domain-containing protein 9. To be Published

Release Date

2013-02-13

Peptides

Histone-lysine N-methyltransferase PRDM9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Histone-lysine N-methyltransferase PRDM9

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