SMTL ID : 4iom.2 (1 other biounit)

N10-formyltetrahydrofolate synthetase from Moorella thermoacetica with folate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-tetramer

Ligands

14 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.74, R.97, G.303, F.304 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.304 Water bridges: A:T.75, A:T.75 Salt bridges: A:K.74, A:R.97 SO4.2: 5 residues within 4Å: Chain A: E.34, S.44, L.45, D.46, K.256 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.34, A:S.44, A:S.44, A:L.45 Water bridges: A:K.256 Salt bridges: A:K.256 SO4.3: 5 residues within 4Å: Chain A: R.175, R.178, M.533, G.537 Chain B: A.188 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.537 Salt bridges: A:R.175, A:R.178 SO4.4: 2 residues within 4Å: Chain A: S.446, K.448 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.446, A:D.449 SO4.5: 2 residues within 4Å: Chain A: K.448, Y.466 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.448, A:K.448, A:N.465, A:D.471 Salt bridges: A:K.448 SO4.10: 5 residues within 4Å: Chain A: A.188 Chain B: R.175, R.178, M.533, G.537 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.175, B:R.178 SO4.11: 4 residues within 4Å: Chain B: K.74, R.97, G.303, F.304 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.304 Salt bridges: B:K.74, B:R.97 SO4.12: 4 residues within 4Å: Chain C: K.74, R.97, G.303, F.304 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:F.304 Water bridges: C:T.75, C:T.75 Salt bridges: C:K.74, C:R.97 SO4.13: 5 residues within 4Å: Chain C: E.34, S.44, L.45, D.46, K.256 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:S.44, C:S.44, C:L.45, C:D.46 Water bridges: C:K.256 Salt bridges: C:K.256 SO4.14: 5 residues within 4Å: Chain C: R.175, R.178, M.533, G.537 Chain D: A.188 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.537 Salt bridges: C:R.175, C:R.178 SO4.15: 2 residues within 4Å: Chain C: S.446, K.448 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.446, C:D.449 SO4.16: 2 residues within 4Å: Chain C: K.448, Y.466 5 PLIP interactions: 5 interactions with chain C Water bridges: C:K.448, C:K.448, C:N.465, C:D.471 Salt bridges: C:K.448 SO4.21: 5 residues within 4Å: Chain C: A.188 Chain D: R.175, R.178, M.533, G.537 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:R.175, D:R.178 SO4.22: 4 residues within 4Å: Chain D: K.74, R.97, G.303, F.304 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:F.304 Salt bridges: D:K.74, D:R.97

6 x TOE: 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL(Non-covalent)

TOE.6: 4 residues within 4Å: Chain A: R.162, I.164, E.194 Chain C: G.185 No protein-ligand interaction detected (PLIP) TOE.7: 4 residues within 4Å: Chain A: R.224, L.480, G.481, Y.482 No protein-ligand interaction detected (PLIP) TOE.9: 5 residues within 4Å: Chain B: R.162, I.164, N.179, E.194 Chain D: G.186 No protein-ligand interaction detected (PLIP) TOE.17: 4 residues within 4Å: Chain A: G.185 Chain C: R.162, I.164, E.194 No protein-ligand interaction detected (PLIP) TOE.18: 4 residues within 4Å: Chain C: R.224, L.480, G.481, Y.482 No protein-ligand interaction detected (PLIP) TOE.20: 5 residues within 4Å: Chain B: G.186 Chain D: R.162, I.164, N.179, E.194 No protein-ligand interaction detected (PLIP)

2 x FOL: FOLIC ACID(Non-covalent)

FOL.8: 9 residues within 4Å: Chain A: A.383, F.384, P.385, D.387, E.389, L.392, Y.396, L.408, W.412 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.383, A:P.385, A:L.392, A:L.408 Hydrogen bonds: A:E.389 pi-Stacking: A:F.384, A:F.384, A:W.412, A:W.412, A:W.412 pi-Cation interactions: A:W.412, A:W.412 FOL.19: 9 residues within 4Å: Chain C: A.383, F.384, P.385, D.387, E.389, L.392, Y.396, L.408, W.412 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:A.383, C:P.385, C:L.392, C:L.408 Hydrogen bonds: C:E.389, C:Y.396 pi-Stacking: C:F.384, C:F.384, C:W.412, C:W.412, C:W.412 pi-Cation interactions: C:W.412, C:W.412

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stec, B., Time passes yet errors remain: Comments on the structure of N(10) -formyltetrahydrofolate synthetase. Protein Sci. (2013)

Release Date

2013-04-10

Peptides

Formate--tetrahydrofolate ligase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Formate--tetrahydrofolate ligase

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