- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 5 residues within 4Å:- Chain A: R.57, S.60, M.61, K.62, H.342
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.57, A:M.61, A:K.62
- Water bridges: A:R.57
- Salt bridges: A:R.57, A:H.342
SO4.3: 5 residues within 4Å:- Chain A: F.167, A.232, R.385
- Ligands: HEM.1, 1G4.4
6 PLIP interactions:6 interactions with chain A- Water bridges: A:S.236, A:Q.384, A:R.385, A:R.385, A:R.385
- Salt bridges: A:R.385
SO4.12: 5 residues within 4Å:- Chain B: R.57, S.60, M.61, K.62, H.342
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.57, B:M.61, B:K.62
- Water bridges: B:R.57
- Salt bridges: B:R.57, B:H.342
SO4.13: 5 residues within 4Å:- Chain B: F.167, A.232, R.385
- Ligands: HEM.11, 1G4.14
6 PLIP interactions:6 interactions with chain B- Water bridges: B:S.236, B:Q.384, B:R.385, B:R.385, B:R.385
- Salt bridges: B:R.385
- 2 x 1G4: (3S,6S)-3,6-bis(4-hydroxybenzyl)piperazin-2-one(Non-covalent)
1G4.4: 12 residues within 4Å:- Chain A: M.61, V.77, V.81, V.82, N.84, A.166, F.167, T.228, P.284, Q.384
- Ligands: HEM.1, SO4.3
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:V.77, A:F.167, A:T.228, A:P.284
- Hydrogen bonds: A:V.81, A:N.84
- Water bridges: A:N.73, A:T.76, A:V.82, A:M.85, A:A.166
1G4.14: 12 residues within 4Å:- Chain B: M.61, V.77, V.81, V.82, N.84, A.166, F.167, T.228, P.284, Q.384
- Ligands: HEM.11, SO4.13
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:V.77, B:F.167, B:T.228, B:P.284
- Hydrogen bonds: B:V.81, B:N.84
- Water bridges: B:N.73, B:T.76, B:T.76, B:V.82, B:M.85
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 6 residues within 4Å:- Chain A: G.14, D.15, S.247, R.251, I.275, L.277
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:G.14, A:S.247, A:R.251, A:R.251
- Water bridges: A:D.15, A:S.247, A:L.277
GOL.6: 6 residues within 4Å:- Chain A: A.67, G.68, A.69, P.70, L.286, G.301
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.67, A:G.301
GOL.7: 6 residues within 4Å:- Chain A: E.63, L.286, A.287, T.288, K.300, G.301
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.63
- Water bridges: A:K.300, A:K.300
GOL.8: 4 residues within 4Å:- Chain A: R.58, D.290, I.291, Q.292
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.58, A:R.58, A:D.290, A:Q.292
- Water bridges: A:Q.292
GOL.9: 4 residues within 4Å:- Chain A: L.192, I.197, S.206, K.210
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:I.197, A:S.206
- Water bridges: A:L.192, A:E.193, A:N.194, A:R.207
GOL.10: 6 residues within 4Å:- Chain A: R.133, F.160, R.161, S.164, R.380
- Chain B: R.390
10 PLIP interactions:9 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.133, A:R.133, A:R.380, A:R.380, B:R.390
- Water bridges: A:D.138, A:F.160, A:R.161, A:S.164, A:S.164
GOL.15: 6 residues within 4Å:- Chain B: G.14, D.15, S.247, R.251, I.275, L.277
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:G.14, B:S.247, B:R.251, B:R.251
- Water bridges: B:D.15, B:S.247, B:L.277
GOL.16: 6 residues within 4Å:- Chain B: A.67, G.68, A.69, P.70, L.286, G.301
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:A.67, B:G.301
GOL.17: 6 residues within 4Å:- Chain B: E.63, L.286, A.287, T.288, K.300, G.301
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.63, B:E.63
- Water bridges: B:K.300, B:K.300
GOL.18: 4 residues within 4Å:- Chain B: R.58, D.290, I.291, Q.292
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.58, B:R.58, B:D.290, B:Q.292
- Water bridges: B:Q.292
GOL.19: 4 residues within 4Å:- Chain B: L.192, I.197, S.206, K.210
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:I.197, B:S.206
- Water bridges: B:L.192, B:E.193, B:N.194, B:R.207
GOL.20: 6 residues within 4Å:- Chain A: R.390
- Chain B: R.133, F.160, R.161, S.164, R.380
10 PLIP interactions:9 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.133, B:R.133, B:R.380, B:R.380, A:R.390
- Water bridges: B:D.138, B:F.160, B:R.161, B:S.164, B:S.164
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fonvielle, M. et al., Substrate and Reaction Specificity of Mycobacterium tuberculosis Cytochrome P450 CYP121: INSIGHTS FROM BIOCHEMICAL STUDIES AND CRYSTAL STRUCTURES. J.Biol.Chem. (2013)
- Release Date
- 2013-05-01
- Peptides
- Cytochrome P450 121: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x 1G4: (3S,6S)-3,6-bis(4-hydroxybenzyl)piperazin-2-one(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fonvielle, M. et al., Substrate and Reaction Specificity of Mycobacterium tuberculosis Cytochrome P450 CYP121: INSIGHTS FROM BIOCHEMICAL STUDIES AND CRYSTAL STRUCTURES. J.Biol.Chem. (2013)
- Release Date
- 2013-05-01
- Peptides
- Cytochrome P450 121: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A