- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 14 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 5 residues within 4Å:- Chain A: R.57, S.60, M.61, K.62, H.342
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:S.60, A:M.61, A:K.62
- Water bridges: A:R.57
- Salt bridges: A:R.57, A:H.342
SO4.3: 6 residues within 4Å:- Chain A: R.133, N.134, F.160, S.164, R.380
- Chain B: R.390
6 PLIP interactions:4 interactions with chain A, 2 interactions with chain B- Water bridges: A:R.133, A:R.380, B:R.390
- Salt bridges: A:R.133, A:R.380, B:R.390
SO4.4: 5 residues within 4Å:- Chain A: P.329, N.330, P.331, T.332, S.333
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.330, A:T.332, A:S.333
SO4.5: 3 residues within 4Å:- Chain A: S.11, R.13, R.16
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.11
- Water bridges: A:A.12, A:R.13, A:R.13
- Salt bridges: A:R.16
SO4.6: 4 residues within 4Å:- Chain A: T.3, L.5, L.6, R.31
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:T.3, A:L.6
- Water bridges: A:R.31, A:R.31, A:R.31
- Salt bridges: A:R.31
SO4.7: 4 residues within 4Å:- Chain A: Y.47, A.48, E.316, H.317
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.316
- Water bridges: A:Y.47, A:A.48, A:E.316
- Salt bridges: A:H.317
SO4.8: 3 residues within 4Å:- Chain A: P.18, D.19, A.20
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.19, A:A.20
SO4.19: 5 residues within 4Å:- Chain B: R.57, S.60, M.61, K.62, H.342
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.60, B:M.61, B:K.62
- Water bridges: B:R.57
- Salt bridges: B:R.57, B:H.342
SO4.20: 6 residues within 4Å:- Chain A: R.390
- Chain B: R.133, N.134, F.160, S.164, R.380
7 PLIP interactions:2 interactions with chain A, 5 interactions with chain B- Water bridges: A:R.390, B:R.133, B:D.138, B:R.380
- Salt bridges: A:R.390, B:R.133, B:R.380
SO4.21: 5 residues within 4Å:- Chain B: P.329, N.330, P.331, T.332, S.333
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.330, B:T.332, B:S.333
- Water bridges: B:T.332, B:T.332, B:T.332
SO4.22: 3 residues within 4Å:- Chain B: S.11, R.13, R.16
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.11
- Water bridges: B:A.12, B:R.13, B:R.13
- Salt bridges: B:R.16
SO4.23: 4 residues within 4Å:- Chain B: T.3, L.5, L.6, R.31
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:T.3, B:L.6
- Water bridges: B:R.31, B:R.31, B:R.31
- Salt bridges: B:R.31
SO4.24: 4 residues within 4Å:- Chain B: Y.47, A.48, E.316, H.317
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.316
- Water bridges: B:Y.47, B:A.48
- Salt bridges: B:H.317
SO4.25: 3 residues within 4Å:- Chain B: P.18, D.19, A.20
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.19, B:A.20
- 16 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 8 residues within 4Å:- Chain A: M.61, T.64, R.71, N.73, L.75, V.82, P.284
- Ligands: 1GB.10
Ligand excluded by PLIPGOL.11: 3 residues within 4Å:- Chain A: A.2, T.3, V.4
Ligand excluded by PLIPGOL.12: 2 residues within 4Å:- Chain A: V.4, E.7
Ligand excluded by PLIPGOL.13: 4 residues within 4Å:- Chain A: R.251, G.322, S.323, I.324
Ligand excluded by PLIPGOL.14: 5 residues within 4Å:- Chain A: D.15, S.247, R.251, I.275, L.277
Ligand excluded by PLIPGOL.15: 1 residues within 4Å:- Chain A: R.339
Ligand excluded by PLIPGOL.16: 4 residues within 4Å:- Chain A: D.90, A.91, H.216, V.217
Ligand excluded by PLIPGOL.17: 5 residues within 4Å:- Chain A: E.63, A.287, T.288, K.300, G.301
Ligand excluded by PLIPGOL.26: 8 residues within 4Å:- Chain B: M.61, T.64, R.71, N.73, L.75, V.82, P.284
- Ligands: 1GB.27
Ligand excluded by PLIPGOL.28: 3 residues within 4Å:- Chain B: A.2, T.3, V.4
Ligand excluded by PLIPGOL.29: 2 residues within 4Å:- Chain B: V.4, E.7
Ligand excluded by PLIPGOL.30: 4 residues within 4Å:- Chain B: R.251, G.322, S.323, I.324
Ligand excluded by PLIPGOL.31: 5 residues within 4Å:- Chain B: D.15, S.247, R.251, I.275, L.277
Ligand excluded by PLIPGOL.32: 1 residues within 4Å:- Chain B: R.339
Ligand excluded by PLIPGOL.33: 4 residues within 4Å:- Chain B: D.90, A.91, H.216, V.217
Ligand excluded by PLIPGOL.34: 5 residues within 4Å:- Chain B: E.63, A.287, T.288, K.300, G.301
Ligand excluded by PLIP- 2 x 1GB: (3S,6S)-3-(4-hydroxybenzyl)-6-(1H-indol-3-ylmethyl)piperazine-2,5-dione(Non-covalent)
1GB.10: 12 residues within 4Å:- Chain A: V.77, V.81, V.82, N.84, A.166, F.167, W.181, T.228, Q.384, R.385
- Ligands: HEM.1, GOL.9
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:V.77, A:F.167, A:F.167, A:T.228
- Hydrogen bonds: A:N.84
- Water bridges: A:T.76, A:V.82, A:A.166
1GB.27: 12 residues within 4Å:- Chain B: V.77, V.81, V.82, N.84, A.166, F.167, W.181, T.228, Q.384, R.385
- Ligands: HEM.18, GOL.26
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:V.77, B:F.167, B:F.167, B:T.228
- Hydrogen bonds: B:N.84
- Water bridges: B:T.76, B:T.76, B:V.82
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fonvielle, M. et al., Substrate and Reaction Specificity of Mycobacterium tuberculosis Cytochrome P450 CYP121: INSIGHTS FROM BIOCHEMICAL STUDIES AND CRYSTAL STRUCTURES. J.Biol.Chem. (2013)
- Release Date
- 2013-05-01
- Peptides
- Cytochrome P450 121: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 16 x GOL: GLYCEROL(Non-functional Binders)
- 2 x 1GB: (3S,6S)-3-(4-hydroxybenzyl)-6-(1H-indol-3-ylmethyl)piperazine-2,5-dione(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fonvielle, M. et al., Substrate and Reaction Specificity of Mycobacterium tuberculosis Cytochrome P450 CYP121: INSIGHTS FROM BIOCHEMICAL STUDIES AND CRYSTAL STRUCTURES. J.Biol.Chem. (2013)
- Release Date
- 2013-05-01
- Peptides
- Cytochrome P450 121: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A