SMTL ID : 4ir4.1

Crystal Structure of the bromodomain of human BAZ2B in complex with 1-[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-yl]ethanone (GSK2834113A)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x IR4: 1-[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-yl]ethanone(Non-covalent)

IR4.1: 5 residues within 4Å: Chain A: W.32, P.33, V.38, N.89, I.95 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.33, A:V.38, A:I.95 Hydrogen bonds: A:N.89 pi-Stacking: A:W.32

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: H.28, E.29 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.29 EDO.3: 4 residues within 4Å: Chain A: R.9, L.17, T.113, F.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.9, A:R.9 EDO.4: 2 residues within 4Å: Chain A: E.72, W.110 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.72, A:E.72 Water bridges: A:R.79 EDO.5: 3 residues within 4Å: Chain A: V.38, N.39, L.40 No protein-ligand interaction detected (PLIP) EDO.6: 2 residues within 4Å: Chain A: E.90, D.91 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.90, A:E.90, A:D.91 Water bridges: A:D.92 EDO.7: 2 residues within 4Å: Chain A: K.52, L.80 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.52 EDO.8: 5 residues within 4Å: Chain A: L.17, M.20, I.21, E.24, T.113 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.24, A:T.113 EDO.9: 2 residues within 4Å: Chain A: E.90, D.92 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.90, A:D.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, P. et al., Discovery and Characterization of GSK2801, a Selective Chemical Probe for the Bromodomains BAZ2A and BAZ2B. J.Med.Chem. (2016)

Release Date

2013-01-23

Peptides

Bromodomain adjacent to zinc finger domain protein 2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain adjacent to zinc finger domain protein 2B

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