SMTL ID : 4irl.1 (2 other biounits)

X-ray structure of the CARD domain of zebrafish GBP-NLRP1 like protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC-GLC-GLC.1: 20 residues within 4Å: Chain A: N.13, D.15, K.16, K.43, E.45, E.46, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, Y.342, R.345 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.43, A:E.45 Water bridges: A:K.43

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 6 residues within 4Å: Chain A: Y.118, K.120, G.244, V.245, P.316, R.317 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.118, A:V.245 Water bridges: A:V.245 Salt bridges: A:K.120

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: F.86, K.89, E.282, N.283, L.286, T.287, L.305 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.89, A:N.283 Water bridges: A:S.307, A:S.307

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 1 residues within 4Å: Chain A: D.237 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.237 Water bridges: A:D.237, A:A.240

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 1 residues within 4Å: Chain A: A.240 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, T. et al., Structure of the caspase-recruitment domain from a zebrafish guanylate-binding protein. Acta Crystallogr.,Sect.F (2013)

Release Date

2013-08-07

Peptides

Maltose-binding periplasmic protein, Novel protein similar to vertebrate guanylate binding protein family: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose-binding periplasmic protein, Novel protein similar to vertebrate guanylate binding protein family

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