SMTL ID : 4irl.2 (2 other biounits)

X-ray structure of the CARD domain of zebrafish GBP-NLRP1 like protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x GLC- GLC- GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC-GLC-GLC.1: 20 residues within 4Å: Chain A: N.13, D.15, K.16, K.43, E.45, E.46, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, F.157, W.231, M.331, W.341, Y.342, R.345 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.45 Water bridges: A:K.43, A:K.43

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 6 residues within 4Å: Chain A: Y.118, K.120, G.244, V.245, P.316, R.317 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.118, A:V.245, A:V.245 Water bridges: A:K.120 Salt bridges: A:K.120

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: Y.411, S.412, H.415, Y.416 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.412 Water bridges: A:H.415 EDO.4: 5 residues within 4Å: Chain A: Q.87, L.90, Y.91, P.92, W.95 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.87, A:Q.87 Water bridges: A:D.88, A:P.92, A:R.99 EDO.5: 4 residues within 4Å: Chain A: Y.177, M.331, P.332, N.333 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.177, A:N.333, A:N.333 Water bridges: A:N.333

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 1 residues within 4Å: Chain A: D.237 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.237 Hydrogen bonds: A:D.237, A:D.237

2 x NA: SODIUM ION(Non-functional Binders)

NA.7: 1 residues within 4Å: Chain A: A.240 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.240 NA.8: 1 residues within 4Å: Chain A: N.13 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.13 Water bridges: A:N.13, A:G.14, A:P.41, A:D.42, A:L.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, T. et al., Structure of the caspase-recruitment domain from a zebrafish guanylate-binding protein. Acta Crystallogr.,Sect.F (2013)

Release Date

2013-08-07

Peptides

Maltose-binding periplasmic protein, Novel protein similar to vertebrate guanylate binding protein family: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Maltose-binding periplasmic protein, Novel protein similar to vertebrate guanylate binding protein family

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