SMTL ID : 4ith.2 (1 other biounit)

Crystal structure of RIP1 kinase in complex with necrostatin-1 analog

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

5 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 1 residues within 4Å: Chain A: H.56 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: E.283, R.286 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: R.286, L.290 Ligand excluded by PLIP IOD.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain A: W.268 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 2 residues within 4Å: Chain A: P.287, F.288 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.287

1 x RCM: (5R)-5-[(7-chloro-1H-indol-3-yl)methyl]-3-methylimidazolidine-2,4-dione(Non-covalent)

RCM.7: 15 residues within 4Å: Chain A: M.67, L.70, V.75, V.76, L.78, M.92, L.129, H.136, I.154, A.155, D.156, L.157, L.159, S.161, F.162 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.70, A:V.75, A:L.129, A:D.156 Hydrogen bonds: A:V.76, A:D.156, A:D.156, A:S.161, A:S.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, T. et al., Structural Basis of RIP1 Inhibition by Necrostatins. Structure (2013)

Release Date

2013-03-13

Peptides

Receptor-interacting serine/threonine-protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Receptor-interacting serine/threonine-protein kinase 1

Related Entries With Identical Sequence