SMTL ID : 4itj.1 (1 other biounit)

Crystal structure of RIP1 kinase in complex with necrostatin-4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 1HX: N-[(1S)-1-(2-chloro-6-fluorophenyl)ethyl]-5-cyano-1-methyl-1H-pyrrole-2-carboxamide(Non-covalent)

1HX.1: 13 residues within 4Å: Chain A: K.45, M.67, L.70, V.75, V.76, L.78, L.90, M.92, I.154, A.155, D.156, S.161, F.162 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.70, A:L.70, A:V.75, A:L.78, A:L.78, A:M.92, A:D.156 Hydrogen bonds: A:D.156 Halogen bonds: A:M.67

5 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: F.285 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: I.43, M.92 Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain A: I.232 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: R.74, H.151 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, T. et al., Structural Basis of RIP1 Inhibition by Necrostatins. Structure (2013)

Release Date

2013-03-13

Peptides

Receptor-interacting serine/threonine-protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Receptor-interacting serine/threonine-protein kinase 1

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