SMTL ID : 4iw3.2 (1 other biounit)

Crystal structure of a Pseudomonas putida prolyl-4-hydroxylase (P4H) in complex with elongation factor Tu (EF-Tu)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.62, D.117, C.118 Ligands: GDP.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.62, H2O.1, H2O.2, H2O.2

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 16 residues within 4Å: Chain A: H.56, V.57, D.58, H.59, G.60, K.61, T.62, T.63, N.172, K.173, D.175, L.176, S.210, A.211, R.212 Ligands: MG.1 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:D.58, A:H.59, A:G.60, A:K.61, A:T.62, A:T.63, A:N.172, A:K.173, A:K.173, A:R.212, A:R.212 Water bridges: A:T.62, A:P.119 Salt bridges: A:K.61, A:D.175

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 5 residues within 4Å: Chain A: P.90 Chain B: H.146, D.148, H.205 Ligands: OGA.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.146, B:D.148, B:H.205, H2O.3

1 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.4: 13 residues within 4Å: Chain A: P.90 Chain B: Y.143, H.146, D.148, V.161, Y.163, L.176, H.205, V.207, R.214, T.218, W.220 Ligands: MN.3 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Y.163, B:T.218 Water bridges: B:R.90, B:S.216, B:T.218 Salt bridges: B:R.90, B:H.146, B:R.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scotti, J.S. et al., Human oxygen sensing may have origins in prokaryotic elongation factor Tu prolyl-hydroxylation. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-01-29

Peptides

Elongation factor Tu-A: A
Putative uncharacterized protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
J

Elongation factor Tu-A

Putative uncharacterized protein

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