SMTL ID : 4j0q.1 (4 other biounits)

Crystal structure of Pseudomonas putida elongation factor Tu (EF-Tu)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.62 Ligands: GDP.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.62, H2O.1, H2O.2, H2O.2, H2O.2

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 16 residues within 4Å: Chain A: H.56, V.57, D.58, H.59, G.60, K.61, T.62, T.63, N.172, K.173, D.175, L.176, S.210, A.211, R.212 Ligands: MG.1 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:H.56, A:D.58, A:H.59, A:G.60, A:K.61, A:T.62, A:T.62, A:T.63, A:T.63, A:N.172, A:K.173, A:K.173, A:S.210, A:A.211, A:R.212 Water bridges: A:D.58, A:D.58, A:K.61, A:K.61, A:T.62 Salt bridges: A:K.61, A:D.175

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 4 residues within 4Å: Chain A: R.212, M.213, K.218, D.220 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.212

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.4: 6 residues within 4Å: Chain A: T.268, G.269, E.299, N.313, C.314, G.315 No protein-ligand interaction detected (PLIP) MPD.5: 2 residues within 4Å: Chain A: D.146, M.149 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.146 Water bridges: A:D.146, A:P.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scotti, J.S. et al., Human oxygen sensing may have origins in prokaryotic elongation factor Tu prolyl-hydroxylation. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-02-05

Peptides

Elongation factor Tu-A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Elongation factor Tu-A

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