SMTL ID : 4j5r.1 (2 other biounits)

TARG1 (C6orf130), Terminal ADP-ribose Glycohydrolase 1 bound to ADP-HPD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x A1R: 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE(Non-covalent)

A1R.1: 23 residues within 4Å: Chain A: C.27, I.28, S.29, M.34, G.35, A.36, G.37, I.38, A.39, L.41, K.78, A.81, P.112, R.113, I.114, G.115, C.116, G.117, L.118, D.119, T.145, L.146 Ligands: CL.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:M.34, A:I.38, A:K.78, A:A.81, A:G.115, A:G.117, A:L.118, A:D.119, A:D.119 Water bridges: A:C.27, A:C.27, A:G.35, A:G.37, A:A.39, A:R.113, A:R.113

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: I.28, S.29, C.32, R.33, M.34, A.81 Ligands: A1R.1 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: G.48, Q.50, E.51 Ligand excluded by PLIP

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 11 residues within 4Å: Chain A: I.28, S.29, E.30, C.32, L.52, L.53, Q.55, Q.56, K.57, A.63, I.76 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.30, A:L.52, A:Q.56, A:K.57 EDO.5: 11 residues within 4Å: Chain A: L.15, F.16, A.17, C.18, P.19, K.20, D.22, L.24, K.45, F.46, R.70 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.19, A:R.70, A:R.70 Water bridges: A:F.16, A:K.45 EDO.6: 4 residues within 4Å: Chain A: E.88, Q.91, K.92, E.95 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.91 Water bridges: A:E.88, A:K.92, A:K.92, A:K.92, A:K.92, A:E.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharifi, R. et al., Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease. Embo J. (2013)

Release Date

2013-03-27

Peptides

O-acetyl-ADP-ribose deacetylase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

O-acetyl-ADP-ribose deacetylase 1

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