- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.25 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x A1R: 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE(Non-covalent)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 7 residues within 4Å:- Chain A: I.28, S.29, C.32, R.33, M.34, A.81
- Ligands: A1R.1
Ligand excluded by PLIPCL.3: 6 residues within 4Å:- Chain A: G.48, Q.50, E.51
- Chain B: G.48, Q.50, E.51
Ligand excluded by PLIPCL.8: 7 residues within 4Å:- Chain B: I.28, S.29, C.32, R.33, M.34, A.81
- Ligands: A1R.7
Ligand excluded by PLIP- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 11 residues within 4Å:- Chain A: I.28, S.29, E.30, C.32, L.52, L.53, Q.55, Q.56, K.57, A.63, I.76
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.30, A:L.52, A:Q.56, A:K.57
EDO.5: 11 residues within 4Å:- Chain A: L.15, F.16, A.17, C.18, P.19, K.20, D.22, L.24, K.45, F.46, R.70
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:P.19, A:R.70, A:R.70
- Water bridges: A:F.16, A:K.45
EDO.6: 4 residues within 4Å:- Chain A: E.88, Q.91, K.92, E.95
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:Q.91
- Water bridges: A:E.88, A:K.92, A:K.92, A:K.92, A:K.92, A:E.95
EDO.9: 11 residues within 4Å:- Chain B: I.28, S.29, E.30, C.32, L.52, L.53, Q.55, Q.56, K.57, A.63, I.76
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.30, B:K.57
- Water bridges: B:Q.56, B:Q.56
EDO.10: 4 residues within 4Å:- Chain B: K.66, Y.71, K.103, N.104
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Y.71
- Water bridges: B:K.66
EDO.11: 11 residues within 4Å:- Chain B: L.15, F.16, A.17, C.18, P.19, K.20, D.22, L.24, K.45, F.46, R.70
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:P.19, B:R.70, B:R.70
EDO.12: 1 residues within 4Å:- Chain B: K.44
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.44
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sharifi, R. et al., Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease. Embo J. (2013)
- Release Date
- 2013-03-27
- Peptides
- O-acetyl-ADP-ribose deacetylase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.25 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x A1R: 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE(Non-covalent)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sharifi, R. et al., Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease. Embo J. (2013)
- Release Date
- 2013-03-27
- Peptides
- O-acetyl-ADP-ribose deacetylase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B