- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x TRH: 2'-DEOXY-THYMIDINE-BETA-L-RHAMNOSE(Non-covalent)
- 4 x 1JB: [[(2R,3S,5R)-5-[5-METHYL-2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]-3-OXIDANYL-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] [(2R,3R,4S,5R,6R)-6-METHYL-3,4,5-TRIS(OXIDANYL)OXAN-2-YL] HYDROGEN PHOSPHATE(Non-covalent)
1JB.2: 19 residues within 4Å:- Chain A: W.67, H.78, F.83, G.117, I.118, L.119, Q.153, A.154, T.155, N.158, Y.159, N.200, N.238, W.320, T.321, Q.322, E.405, G.407, R.408
23 PLIP interactions:23 interactions with chain A- Hydrophobic interactions: A:F.83, A:L.119, A:W.320
- Hydrogen bonds: A:T.155, A:T.155, A:T.155, A:N.158, A:Y.159, A:N.200, A:N.238, A:E.405, A:R.408
- Water bridges: A:H.78, A:Q.153, A:Q.153, A:K.198, A:T.321, A:Q.322, A:G.407
- Salt bridges: A:R.408, A:R.408
- pi-Stacking: A:F.83, A:W.320
1JB.4: 19 residues within 4Å:- Chain B: W.67, H.78, F.83, G.117, I.118, L.119, Q.153, A.154, T.155, N.158, Y.159, N.200, N.238, W.320, T.321, Q.322, E.405, G.407, R.408
23 PLIP interactions:23 interactions with chain B- Hydrophobic interactions: B:F.83, B:L.119, B:W.320
- Hydrogen bonds: B:T.155, B:T.155, B:T.155, B:N.158, B:Y.159, B:N.200, B:N.238, B:E.405, B:R.408
- Water bridges: B:H.78, B:Q.153, B:Q.153, B:K.198, B:T.321, B:Q.322, B:G.407
- Salt bridges: B:R.408, B:R.408
- pi-Stacking: B:F.83, B:W.320
1JB.6: 19 residues within 4Å:- Chain C: W.67, H.78, F.83, G.117, I.118, L.119, Q.153, A.154, T.155, N.158, Y.159, N.200, N.238, W.320, T.321, Q.322, E.405, G.407, R.408
21 PLIP interactions:21 interactions with chain C- Hydrophobic interactions: C:F.83, C:L.119, C:W.320, C:Q.322
- Hydrogen bonds: C:T.155, C:T.155, C:N.158, C:N.200, C:N.238, C:R.408
- Water bridges: C:H.78, C:Q.153, C:Q.153, C:Q.153, C:Q.153, C:Q.322
- Salt bridges: C:R.408, C:R.408, C:R.408
- pi-Stacking: C:F.83, C:W.320
1JB.8: 19 residues within 4Å:- Chain D: W.67, H.78, F.83, G.117, I.118, L.119, Q.153, A.154, T.155, N.158, Y.159, N.200, N.238, W.320, T.321, Q.322, E.405, G.407, R.408
21 PLIP interactions:21 interactions with chain D- Hydrophobic interactions: D:F.83, D:L.119, D:W.320, D:Q.322
- Hydrogen bonds: D:T.155, D:T.155, D:N.158, D:N.200, D:N.238, D:R.408
- Water bridges: D:H.78, D:Q.153, D:Q.153, D:Q.153, D:Q.153, D:Q.322
- Salt bridges: D:R.408, D:R.408, D:R.408
- pi-Stacking: D:F.83, D:W.320
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kubiak, R.L. et al., Structure of EvaA: A Paradigm for Sugar 2,3-Dehydratases. Biochemistry (2013)
- Release Date
- 2013-05-22
- Peptides
- EvaA 2,3-dehydratase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
BD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x TRH: 2'-DEOXY-THYMIDINE-BETA-L-RHAMNOSE(Non-covalent)
- 4 x 1JB: [[(2R,3S,5R)-5-[5-METHYL-2,4-BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]-3-OXIDANYL-OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] [(2R,3R,4S,5R,6R)-6-METHYL-3,4,5-TRIS(OXIDANYL)OXAN-2-YL] HYDROGEN PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kubiak, R.L. et al., Structure of EvaA: A Paradigm for Sugar 2,3-Dehydratases. Biochemistry (2013)
- Release Date
- 2013-05-22
- Peptides
- EvaA 2,3-dehydratase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
BD
B