- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.69 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TLO: 5'-O-[(S)-HYDROXY{[(S)-HYDROXY(PHENOXY)PHOSPHORYL]OXY}PHOSPHORYL]THYMIDINE(Non-covalent)
- 2 x TRH: 2'-DEOXY-THYMIDINE-BETA-L-RHAMNOSE(Non-covalent)
TRH.2: 17 residues within 4Å:- Chain A: R.104, W.106, Q.107, Q.108, S.193, W.194, W.288, H.297, Y.302, F.303, V.333, R.351, Q.367, C.368, T.369, N.372, Y.373
28 PLIP interactions:28 interactions with chain A- Hydrophobic interactions: A:W.106, A:Q.108, A:Y.302, A:F.303, A:V.333, A:Q.367
- Hydrogen bonds: A:R.104, A:S.193, A:S.193, A:R.351, A:Q.367, A:T.369, A:T.369, A:N.372
- Water bridges: A:Q.191, A:S.193, A:S.193, A:H.297, A:R.351, A:R.351, A:D.353, A:Y.373, A:Y.373, A:E.452
- Salt bridges: A:R.351, A:R.351
- pi-Stacking: A:W.106, A:Y.302
TRH.8: 17 residues within 4Å:- Chain B: R.104, W.106, Q.107, Q.108, S.193, W.194, W.288, H.297, Y.302, F.303, V.333, R.351, Q.367, C.368, T.369, N.372, Y.373
28 PLIP interactions:28 interactions with chain B- Hydrophobic interactions: B:W.106, B:Q.108, B:Y.302, B:F.303, B:V.333, B:Q.367
- Hydrogen bonds: B:R.104, B:S.193, B:S.193, B:R.351, B:Q.367, B:T.369, B:T.369, B:N.372
- Water bridges: B:Q.191, B:S.193, B:S.193, B:H.297, B:R.351, B:R.351, B:D.353, B:Y.373, B:Y.373, B:E.452
- Salt bridges: B:R.351, B:R.351
- pi-Stacking: B:W.106, B:Y.302
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 3 residues within 4Å:- Chain A: R.276
- Chain B: R.112, R.279
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.112, B:R.112, B:R.279, A:R.276
- Water bridges: A:H.94
EDO.4: 4 residues within 4Å:- Chain A: A.391, R.393, I.396, R.415
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.393, A:R.415
- Water bridges: A:A.391
EDO.5: 8 residues within 4Å:- Chain A: L.387, A.391, P.392, R.395, I.419, D.420, A.421, D.422
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.395, A:D.422
EDO.6: 3 residues within 4Å:- Chain A: V.337, P.344, I.460
No protein-ligand interaction detected (PLIP)EDO.9: 3 residues within 4Å:- Chain A: R.112, R.279
- Chain B: R.276
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:R.276, A:R.112, A:R.112, A:R.279
- Water bridges: B:H.94
EDO.10: 4 residues within 4Å:- Chain B: A.391, R.393, I.396, R.415
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.393, B:R.415
- Water bridges: B:A.391
EDO.11: 8 residues within 4Å:- Chain B: L.387, A.391, P.392, R.395, I.419, D.420, A.421, D.422
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.395, B:D.422
EDO.12: 3 residues within 4Å:- Chain B: V.337, P.344, I.460
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kubiak, R.L. et al., Structure of EvaA: A Paradigm for Sugar 2,3-Dehydratases. Biochemistry (2013)
- Release Date
- 2013-05-22
- Peptides
- EvaA 2,3-dehydratase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.69 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x TLO: 5'-O-[(S)-HYDROXY{[(S)-HYDROXY(PHENOXY)PHOSPHORYL]OXY}PHOSPHORYL]THYMIDINE(Non-covalent)
- 2 x TRH: 2'-DEOXY-THYMIDINE-BETA-L-RHAMNOSE(Non-covalent)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kubiak, R.L. et al., Structure of EvaA: A Paradigm for Sugar 2,3-Dehydratases. Biochemistry (2013)
- Release Date
- 2013-05-22
- Peptides
- EvaA 2,3-dehydratase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A