SMTL ID : 4j89.1 (1 other biounit)

Different photochemical events of a genetically encoded aryl azide define and modulate GFP fluorescence

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: G.115, D.116, T.117 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.116, A:D.116 SO4.3: 6 residues within 4Å: Chain A: V.56, P.57, W.58, P.59, H.138, Y.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.58 Water bridges: A:W.58 Salt bridges: A:H.138

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: E.94, R.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.108 EDO.4: 4 residues within 4Å: Chain A: K.106, T.107, R.108, E.123 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.106, A:R.108 Water bridges: A:R.108 EDO.6: 2 residues within 4Å: Chain A: R.108, E.123 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.108, A:E.123 EDO.7: 3 residues within 4Å: Chain A: R.31, T.50, R.214 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.31, A:E.33, A:R.214 EDO.8: 3 residues within 4Å: Chain A: E.89, K.112, I.187 No protein-ligand interaction detected (PLIP) EDO.9: 2 residues within 4Å: Chain A: K.130, E.131 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.131 Water bridges: A:D.132 EDO.10: 4 residues within 4Å: Chain A: Y.142, L.206, S.207, K.208 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.208 EDO.11: 2 residues within 4Å: Chain A: N.148, Y.150 No protein-ligand interaction detected (PLIP) EDO.12: 6 residues within 4Å: Chain A: Y.142, N.143, S.204, V.205, L.206 Ligands: EDO.14 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.204, A:L.206 EDO.13: 2 residues within 4Å: Chain A: D.101, D.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.101, A:D.102 EDO.14: 2 residues within 4Å: Chain A: N.143 Ligands: EDO.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.143 EDO.15: 1 residues within 4Å: Chain A: D.189 No protein-ligand interaction detected (PLIP) EDO.16: 4 residues within 4Å: Chain A: H.147, F.164, K.165, R.167 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.165, A:R.167, A:R.167

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.5: 4 residues within 4Å: Chain A: R.72, P.74, D.75, H.76 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.72, A:R.72, A:D.75, A:D.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reddington, S.C. et al., Different Photochemical Events of a Genetically Encoded Phenyl Azide Define and Modulate GFP Fluorescence. Angew.Chem.Int.Ed.Engl. (2013)

Release Date

2013-06-26

Peptides

Green fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Green fluorescent protein

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