SMTL ID : 4j89.2 (1 other biounit)

Different photochemical events of a genetically encoded aryl azide define and modulate GFP fluorescence

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: F.99, K.100, D.101, D.102 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.101, A:D.101, A:D.102, A:D.102 SO4.2: 3 residues within 4Å: Chain A: H.147, F.164, K.165 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.165 Water bridges: A:H.147, A:N.148, A:N.163, A:N.163, A:K.165, A:R.167, A:R.167 Salt bridges: A:H.147 SO4.3: 6 residues within 4Å: Chain A: Y.142, N.143, F.144, S.204, V.205, L.206 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.144, A:L.206 Water bridges: A:N.143

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: L.193, L.194 Ligands: EDO.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.194 EDO.5: 3 residues within 4Å: Chain A: Y.142, S.207, K.208 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.208, A:K.208 EDO.6: 4 residues within 4Å: Chain A: E.18, L.19, V.30, R.31 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.18, A:L.19, A:L.19, A:R.31 EDO.7: 5 residues within 4Å: Chain A: S.207, K.208, D.209, P.210, V.218 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.207, A:S.207, A:K.208 EDO.8: 4 residues within 4Å: Chain A: H.76, A.226, G.227, I.228 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.76, A:G.227 EDO.9: 1 residues within 4Å: Chain A: N.163 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.163 EDO.10: 6 residues within 4Å: Chain A: E.35, G.36, D.37, K.42, L.43, T.44 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.37, A:T.44, A:T.44 EDO.11: 5 residues within 4Å: Chain A: Y.150, I.151, N.197, H.198, G.227 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.227 EDO.12: 3 residues within 4Å: Chain A: K.165, R.167, L.177 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.165, A:K.165, A:R.167 EDO.13: 5 residues within 4Å: Chain A: R.79, H.80, L.193, L.194 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reddington, S.C. et al., Different Photochemical Events of a Genetically Encoded Phenyl Azide Define and Modulate GFP Fluorescence. Angew.Chem.Int.Ed.Engl. (2013)

Release Date

2013-06-26

Peptides

Green fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Green fluorescent protein

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