SMTL ID : 4j99.6 (5 other biounits)

Crystal Structure of FGF Receptor 2 (FGFR2) Kinase Domain Harboring the Gain-of-Function K659T Mutation.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.181, R.205, Y.213, T.215, T.216 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.216, A:T.216 Water bridges: A:R.220 Salt bridges: A:R.181, A:R.205 SO4.4: 4 residues within 4Å: Chain A: T.191, E.192, N.193, V.195 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.192, A:N.193, A:N.193, A:V.195 SO4.5: 4 residues within 4Å: Chain B: R.181, R.205, Y.213, T.215 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.213 Water bridges: B:T.215, B:T.215 Salt bridges: B:R.181, B:R.205

2 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)

ACP.2: 20 residues within 4Å: Chain A: L.43, G.44, E.45, G.46, A.47, F.48, V.51, A.71, K.73, E.90, V.120, E.121, Y.122, A.123, N.127, N.187, L.189, D.200, G.202 Ligands: MG.3 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:A.47, A:F.48, A:K.73, A:E.121, A:A.123, A:N.127, A:N.187, A:D.200 Water bridges: A:N.187 Salt bridges: A:K.73 ACP.6: 20 residues within 4Å: Chain B: L.43, G.46, A.47, F.48, G.49, V.51, A.71, K.73, I.104, V.120, E.121, Y.122, A.123, N.127, R.186, N.187, L.189, D.200 Ligands: MG.7, MG.8 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:A.47, B:F.48, B:G.49, B:K.73, B:E.121, B:A.123, B:N.127, B:R.186 Salt bridges: B:K.73

3 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: N.187, D.200 Ligands: ACP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.200 MG.7: 3 residues within 4Å: Chain B: N.187, D.200 Ligands: ACP.6 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.200 MG.8: 5 residues within 4Å: Chain B: K.73, E.90, D.200, G.202 Ligands: ACP.6 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, H. et al., Cracking the Molecular Origin of Intrinsic Tyrosine Kinase Activity through Analysis of Pathogenic Gain-of-Function Mutations. Cell Rep (2013)

Release Date

2013-08-07

Peptides

Fibroblast growth factor receptor 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Fibroblast growth factor receptor 2

Related Entries With Identical Sequence