SMTL ID : 4jd7.1

Crystal structure of pput_1285, a putative hydroxyproline epimerase from Pseudomonas putida f1 (target EFI-506500), open form, space group P212121, bound sulfate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

14 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: P.46, L.63, H.64, R.66, W.67 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.67 Water bridges: A:H.64, A:H.64 Salt bridges: A:H.64, A:R.66 SO4.2: 6 residues within 4Å: Chain A: C.110, G.111, H.112, C.258, G.259, T.260 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.111, A:H.112, A:G.259, A:T.260, A:T.260 Water bridges: A:H.112, A:H.112, A:N.155, A:C.258 Salt bridges: A:H.112 SO4.3: 2 residues within 4Å: Chain A: K.24, R.66 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.24, A:R.66 SO4.4: 3 residues within 4Å: Chain A: H.146, E.147, D.148 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.147 Water bridges: A:D.148 Salt bridges: A:H.146 SO4.5: 2 residues within 4Å: Chain A: D.199, R.201 3 PLIP interactions: 3 interactions with chain A Water bridges: A:L.198, A:R.201 Salt bridges: A:R.201 SO4.6: 3 residues within 4Å: Chain A: R.201, Y.253, R.255 12 PLIP interactions: 10 interactions with chain A, 2 interactions with chain B Water bridges: A:R.201, A:R.201, A:K.251, A:Y.253, A:Y.253, A:R.255, A:R.255, A:R.255, A:R.255, B:D.79, B:D.79 Salt bridges: A:R.255 SO4.7: 6 residues within 4Å: Chain A: N.168, V.169, P.170, G.171, H.172, G.173 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.168, A:G.171, A:H.172, A:G.173 SO4.8: 5 residues within 4Å: Chain B: P.46, L.63, H.64, R.66, W.67 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:W.67 Water bridges: B:H.64, B:H.64 Salt bridges: B:H.64, B:R.66 SO4.9: 6 residues within 4Å: Chain B: C.110, G.111, H.112, C.258, G.259, T.260 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.111, B:H.112, B:G.259, B:T.260, B:T.260, B:T.260 Water bridges: B:H.112, B:H.112, B:N.184 Salt bridges: B:H.112 SO4.10: 4 residues within 4Å: Chain B: K.24, R.66, E.322, W.328 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.322 Salt bridges: B:K.24, B:R.66 SO4.11: 4 residues within 4Å: Chain B: R.61, A.104, G.105, Y.106 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.104, B:Y.106 Salt bridges: B:R.61 SO4.12: 3 residues within 4Å: Chain B: H.146, E.147, D.148 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:E.147 Water bridges: B:E.147, B:E.147, B:E.147, B:E.147, B:D.148 Salt bridges: B:H.146 SO4.13: 3 residues within 4Å: Chain B: T.95, I.127, H.132 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.95, B:T.95 Water bridges: B:T.95, B:T.95 Salt bridges: B:H.132 SO4.14: 1 residues within 4Å: Chain B: R.301 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.301 Salt bridges: B:R.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetting, M.W. et al., Crystal structure of pput_1285, a putative hydroxyproline epimerase from Pseudomonas putida f1 (target EFI-506500), open form, space group P212121, bound sulfate. To be Published

Release Date

2013-03-06

Peptides

Proline racemase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Proline racemase

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