SMTL ID : 4jk7.2 (1 other biounit)

Open and closed forms of wild-type human PRP8 RNase H-like domain with bound Mg ion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 1 residues within 4Å: Chain A: D.13 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.13, H2O.5, H2O.5, H2O.9 MG.2: 1 residues within 4Å: Chain A: E.88 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.88, H2O.5, H2O.6, H2O.11

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 6 residues within 4Å: Chain A: T.56, W.59, Q.62, L.68, A.69, K.72 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: V.20, T.21 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schellenberg, M.J. et al., A conformational switch in PRP8 mediates metal ion coordination that promotes pre-mRNA exon ligation. Nat.Struct.Mol.Biol. (2013)

Release Date

2013-05-22

Peptides

Pre-mRNA-processing-splicing factor 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Pre-mRNA-processing-splicing factor 8

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