SMTL ID : 4jk9.1 (1 other biounit)

Open and closed forms of wild-type human PRP8 RNase H-like domain with bound Co ion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 3 residues within 4Å: Chain A: D.154, H.197, H.198 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.154, A:H.197, A:H.198, H2O.7, H2O.10, H2O.12 CO.2: 1 residues within 4Å: Chain A: E.75 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.75, H2O.10, H2O.10, H2O.11, H2O.11

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: E.143, P.144 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.143 Water bridges: A:M.146

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: S.160, S.161, Y.162 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schellenberg, M.J. et al., A conformational switch in PRP8 mediates metal ion coordination that promotes pre-mRNA exon ligation. Nat.Struct.Mol.Biol. (2013)

Release Date

2013-05-22

Peptides

Pre-mRNA-processing-splicing factor 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pre-mRNA-processing-splicing factor 8

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