SMTL ID : 4jks.1

Crystal structure of probable sugar kinase protein from Rhizobium etli CFN 42 complexed with DMSO, NYSGRC Target 14306

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

homo-dimer

Ligands

2 x ADN: ADENOSINE(Non-covalent)

ADN.1: 19 residues within 4Å: Chain A: N.33, I.35, D.37, M.57, G.80, G.81, S.82, N.85, S.137, I.139, M.149, T.151, L.153, E.178, Y.180, T.296, G.297, D.300, P.336 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.33, A:D.37, A:G.81, A:S.82, A:N.85, A:T.151, A:G.297 Water bridges: A:R.147, A:R.147, A:R.147, A:G.297, A:D.300 pi-Stacking: A:Y.180 ADN.4: 19 residues within 4Å: Chain B: N.33, I.35, D.37, M.57, G.80, G.81, S.82, N.85, S.137, I.139, M.149, T.151, L.153, E.178, Y.180, T.296, G.297, D.300, P.336 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:N.33, B:D.37, B:G.81, B:S.82, B:N.85, B:T.151, B:G.297 Water bridges: B:R.147, B:R.147, B:R.147, B:G.297, B:D.300 pi-Stacking: B:Y.180, B:Y.180

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 6 residues within 4Å: Chain A: I.38, A.65, E.66, Y.69, R.136 Ligands: DMS.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.136 Salt bridges: A:E.66 DMS.3: 7 residues within 4Å: Chain A: A.62, A.65, E.66, P.133, R.136, Y.152 Ligands: DMS.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.136 Water bridges: A:R.136 Salt bridges: A:E.66 DMS.5: 6 residues within 4Å: Chain B: A.62, A.65, E.66, R.136, Y.152 Ligands: DMS.6 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:E.66 DMS.6: 6 residues within 4Å: Chain B: I.38, A.65, E.66, Y.69, R.136 Ligands: DMS.5 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.136 Salt bridges: B:E.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malashkevich, V.N. et al., Crystal structure of probable sugar kinase protein from Rhizobium etli CFN 42 complexed with DMSO, NYSGRC Target 14306. To be Published

Release Date

2013-03-27

Peptides

Probable sugar kinase protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable sugar kinase protein

Related Entries With Identical Sequence