SMTL ID : 4jku.1 (1 other biounit)

Crystal structure of probable sugar kinase protein from Rhizobium etli CFN 42 complexed with quinaldic acid, NYSGRC Target 14306

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

monomer

Ligands

1 x ADN: ADENOSINE(Non-covalent)

ADN.1: 19 residues within 4Å: Chain A: N.33, I.35, D.37, M.57, G.80, G.81, S.82, N.85, S.137, I.139, M.149, T.151, L.153, E.178, Y.180, T.296, G.297, D.300, P.336 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.33, A:D.37, A:G.81, A:S.82, A:N.85, A:T.151, A:G.297 Water bridges: A:R.147, A:R.147, A:R.147, A:D.300, A:D.300 pi-Stacking: A:Y.180

1 x QNC: quinoline-2-carboxylic acid(Non-covalent)

QNC.2: 6 residues within 4Å: Chain A: S.212, F.213, D.216, R.219, S.243, Q.246 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.216 Hydrogen bonds: A:R.219, A:Q.246 Salt bridges: A:R.219 pi-Stacking: A:F.213

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 6 residues within 4Å: Chain A: I.38, A.65, E.66, Y.69, R.136 Ligands: DMS.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.136 Salt bridges: A:E.66 DMS.4: 6 residues within 4Å: Chain A: A.62, A.65, E.66, R.136, Y.152 Ligands: DMS.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.136 Water bridges: A:R.136 Salt bridges: A:E.66 DMS.5: 6 residues within 4Å: Chain A: A.55, D.211, S.212, N.237, Q.239, E.240 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.212 Salt bridges: A:D.211 DMS.6: 6 residues within 4Å: Chain A: T.53, A.56, M.57, N.58, F.213, R.217 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.217 Water bridges: A:R.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malashkevich, V.N. et al., Crystal structure of probable sugar kinase protein from Rhizobium etli CFN 42 complexed with quinaldic acid, NYSGRC Target 14306. To be Published

Release Date

2013-03-27

Peptides

Probable sugar kinase protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable sugar kinase protein

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