SMTL ID : 4jlg.1 (1 other biounit)

SETD7 in complex with inhibitor (R)-PFI-2 and S-adenosyl-methionine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 16 residues within 4Å: Chain A: I.115, S.117, A.118, G.119, E.120, G.156, N.157, H.185, K.186, A.187, N.188, H.189, Y.227, W.244, E.248 Ligands: 1L8.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:E.120, A:N.188, A:N.188, A:H.189, A:E.248 Water bridges: A:G.156, A:N.157, A:N.157, A:N.157, A:K.186 Salt bridges: A:K.186 pi-Stacking: A:W.244, A:W.244, A:W.244

1 x 1L8: 8-fluoro-N-{(2R)-1-oxo-1-(pyrrolidin-1-yl)-3-[3-(trifluoromethyl)phenyl]propan-2-yl}-1,2,3,4-tetrahydroisoquinoline-6-sulfonamide(Non-covalent)

1L8.2: 18 residues within 4Å: Chain A: Y.137, H.144, V.147, D.148, N.155, G.156, N.157, T.158, L.159, S.160, V.166, Y.197, Y.227, G.228, Y.229, H.231, S.232 Ligands: SAM.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.227, A:Y.229, A:Y.229 Hydrogen bonds: A:H.144, A:S.160, A:G.228 Water bridges: A:D.148

17 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 3 residues within 4Å: Chain A: G.18, P.41, E.43 Ligand excluded by PLIP UNX.4: 1 residues within 4Å: Chain A: G.29 Ligand excluded by PLIP UNX.5: 1 residues within 4Å: Chain A: E.69 Ligand excluded by PLIP UNX.6: 2 residues within 4Å: Chain A: S.117, G.119 Ligand excluded by PLIP UNX.7: 4 residues within 4Å: Chain A: S.160, L.161, D.162, K.209 Ligand excluded by PLIP UNX.8: 2 residues within 4Å: Chain A: E.243, W.244 Ligand excluded by PLIP UNX.9: 4 residues within 4Å: Chain A: E.30, M.31, D.53, G.54 Ligand excluded by PLIP UNX.10: 2 residues within 4Å: Chain A: D.162, E.163 Ligand excluded by PLIP UNX.11: 2 residues within 4Å: Chain A: Y.197, K.209 Ligand excluded by PLIP UNX.12: 3 residues within 4Å: Chain A: R.71, P.72, H.73 Ligand excluded by PLIP UNX.13: 2 residues within 4Å: Chain A: Y.109, K.125 Ligand excluded by PLIP UNX.14: 5 residues within 4Å: Chain A: L.161, M.199, F.200, P.207, I.208 Ligand excluded by PLIP UNX.15: 2 residues within 4Å: Chain A: H.175, K.178 Ligand excluded by PLIP UNX.16: 1 residues within 4Å: Chain A: V.126 Ligand excluded by PLIP UNX.17: 6 residues within 4Å: Chain A: G.9, V.10, C.11, G.23, E.24, V.25 Ligand excluded by PLIP UNX.18: 2 residues within 4Å: Chain A: P.172 Ligands: UNX.19 Ligand excluded by PLIP UNX.19: 3 residues within 4Å: Chain A: P.172, Y.173 Ligands: UNX.18 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barsyte-Lovejoy, D. et al., (R)-PFI-2 is a potent and selective inhibitor of SETD7 methyltransferase activity in cells. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2013-04-17

Peptides

Histone-lysine N-methyltransferase SETD7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase SETD7

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