SMTL ID : 4jls.2 (1 other biounit)

Crystal Structure of E. coli XGPRT in complex with (3R,4S)-4-(Guanin-9-yl)-3-hydroxypyrrolidin-1-N-ylacetylphosphonic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x 3ZE: {2-[(3S,4R)-3-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-4-hydroxypyrrolidin-1-yl]-2-oxoethyl}phosphonic acid(Non-covalent)

3ZE.1: 11 residues within 4Å: Chain A: L.90, V.91, D.92, T.93, G.94, G.95, T.96, K.115, T.133, W.134, I.135 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:D.92, A:D.92, A:T.93, A:T.93, A:T.93, A:T.93, A:G.94, A:T.96, A:K.115, A:I.135, A:I.135, A:I.135 3ZE.2: 11 residues within 4Å: Chain B: L.90, V.91, D.92, T.93, G.94, G.95, T.96, K.115, T.133, W.134, I.135 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:D.92, B:T.93, B:T.93, B:T.93, B:G.94, B:G.95, B:T.96, B:T.96, B:K.115, B:I.135, B:I.135, B:I.135 Water bridges: B:A.97, B:Q.137 pi-Stacking: B:W.134 pi-Cation interactions: B:W.134 3ZE.3: 11 residues within 4Å: Chain C: L.90, V.91, D.92, T.93, G.94, G.95, T.96, K.115, T.133, W.134, I.135 17 PLIP interactions: 17 interactions with chain C Hydrogen bonds: C:D.92, C:T.93, C:T.93, C:T.93, C:G.94, C:G.95, C:T.96, C:T.96, C:K.115, C:I.135, C:I.135, C:I.135 Water bridges: C:T.93, C:T.93, C:A.97 pi-Stacking: C:W.134 pi-Cation interactions: C:W.134 3ZE.4: 11 residues within 4Å: Chain D: L.90, V.91, D.92, T.93, G.94, G.95, T.96, K.115, T.133, W.134, I.135 15 PLIP interactions: 15 interactions with chain D Hydrogen bonds: D:D.92, D:D.92, D:T.93, D:T.93, D:T.93, D:G.94, D:G.95, D:T.96, D:K.115, D:I.135, D:I.135, D:I.135 Water bridges: D:A.97, D:Q.137 pi-Cation interactions: D:W.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Keough, D.T. et al., Inhibition of the Escherichia coli 6-oxopurine phosphoribosyltransferases by nucleoside phosphonates: potential for new antibacterial agents. J.Med.Chem. (2013)

Release Date

2014-12-24

Peptides

Xanthine phosphoribosyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
H

C
I

D
J

Xanthine phosphoribosyltransferase

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