SMTL ID : 4jnx.1

Crystal structure of RNA silencing suppressor p19 complexed with double-helical RNA 20mer pG(CUG)6C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: M.4, S.6, F.48, R.50 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.6, A:S.6 Water bridges: A:K.49, A:K.49, A:R.50, A:R.50, A:R.50, A:R.50 Salt bridges: A:R.50 SO4.2: 2 residues within 4Å: Chain A: S.16, T.18 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.16, A:S.16 Water bridges: A:W.17, A:W.17 SO4.3: 3 residues within 4Å: Chain B: S.6, F.48, R.50 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.6 Water bridges: B:R.50 Salt bridges: B:R.50 SO4.4: 2 residues within 4Å: Chain B: S.16, T.18 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.16, B:T.18

2 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 1 residues within 4Å: Chain B: S.91 No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Chain A: S.91 Chain C: C.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Katorcha, E. et al., Procrustean bed of RNA silencing suppression. To be Published

Release Date

2014-03-19

Peptides

RNA silencing suppressor p19: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

RNA silencing suppressor p19

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