SMTL ID : 4knq.1

Crystal structure of 1nt-5'-overhanging double-helical CCG-repetitive RNA 20mer complexed with RSS p19

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain D: S.6, F.48, R.50 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:S.6 Water bridges: D:K.49, D:R.50 Salt bridges: D:R.50 SO4.2: 2 residues within 4Å: Chain D: S.16, T.18 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:S.16 Water bridges: D:S.16, D:S.16, D:W.17 SO4.3: 4 residues within 4Å: Chain D: T.69, G.70, C.112, I.116 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:G.70 SO4.4: 3 residues within 4Å: Chain B: S.6, F.48, R.50 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.6 Water bridges: B:K.49, B:R.50 Salt bridges: B:R.50 SO4.5: 2 residues within 4Å: Chain B: S.16, T.18 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.16 Water bridges: B:S.16, B:S.16, B:W.17 SO4.6: 4 residues within 4Å: Chain B: T.69, G.70, C.112, I.116 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tamjar, J. et al., Structural insights into CNG-repetitive RNAs associated with human Trinucleotide Repeat Expansion Diseases (TREDs). To be Published

Release Date

2014-05-14

Peptides

RNA silencing suppressor p19: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

D
A

RNA silencing suppressor p19

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