SMTL ID : 4jpk.1

Crystal structure of the germline-targeting HIV-1 gp120 engineered outer domain eOD-GT6 in complex with a putative VRC01 germline precursor Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain C: S.16, S.17, N.18 Ligands: NAG.2 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.18, C:S.94 NAG.2: 7 residues within 4Å: Chain C: H.14, S.16, S.17, N.65, F.149, C.151 Ligands: NAG.1 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.149 Hydrogen bonds: C:H.14, C:S.17, C:N.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jardine, J. et al., Rational HIV immunogen design to target specific germline B cell receptors. Science (2013)

Release Date

2013-04-10

Peptides

Putative VRC01 germline precursor Fab heavy chain: A
Putative VRC01 germline precursor Fab light chain: B
Germline-targeting HIV-1 gp120 engineered outer domain, eOD-GT6: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
A

Putative VRC01 germline precursor Fab heavy chain

Putative VRC01 germline precursor Fab light chain

Germline-targeting HIV-1 gp120 engineered outer domain, eOD-GT6

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