SMTL ID : 4jra.1 (1 other biounit)

CRYSTAL STRUCTURE OF THE BOTULINUM NEUROTOXIN A RECEPTOR-BINDING DOMAIN IN COMPLEX WITH THE LUMINAL DOMAIN Of SV2C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: R.160, D.246, F.247, G.249 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: F.146, Y.157, R.181, I.183 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: V.275, G.276, L.356, E.357, D.360 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: L.244, K.245, S.372, K.383 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: Y.148, S.149, I.152, Y.157 Ligands: NA.6 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: Y.127, S.149, Q.150, M.151 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.6: 7 residues within 4Å: Chain A: Y.148, S.149, I.152, S.155, Y.157, I.158 Ligands: CL.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.149, A:S.149, A:S.155 NA.7: 8 residues within 4Å: Chain A: D.246, D.250, Y.251, L.252, Q.253, K.256, Y.258, P.433 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.246, A:K.256, A:Y.258, A:Y.258 Water bridges: A:Y.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benoit, R.M. et al., Structural basis for recognition of synaptic vesicle protein 2C by botulinum neurotoxin A. Nature (2014)

Release Date

2013-11-20

Peptides

Botulinum neurotoxin type A: A
Synaptic vesicle glycoprotein 2C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Botulinum neurotoxin type A

Synaptic vesicle glycoprotein 2C

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