- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 4 residues within 4Å:- Chain A: Y.552, P.553, K.554, V.555
Ligand excluded by PLIPCL.6: 4 residues within 4Å:- Chain B: Y.552, P.553, K.554, V.555
Ligand excluded by PLIPCL.11: 4 residues within 4Å:- Chain C: Y.552, P.553, K.554, V.555
Ligand excluded by PLIPCL.15: 4 residues within 4Å:- Chain D: Y.552, P.553, K.554, V.555
Ligand excluded by PLIP- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 4 residues within 4Å:- Chain A: M.99, R.100, E.102, D.333
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:M.99, A:R.100, A:E.102, A:D.333, H2O.1, H2O.3
MG.7: 5 residues within 4Å:- Chain B: M.99, R.100, E.102, R.302, D.333
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:M.99, B:R.100, B:E.102, B:D.333, H2O.5
MG.12: 4 residues within 4Å:- Chain C: M.99, R.100, E.102, D.333
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:M.99, C:R.100, C:E.102, C:D.333, H2O.7
MG.16: 4 residues within 4Å:- Chain D: M.99, R.100, E.102, D.333
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:M.99, D:R.100, D:E.102, D:D.333, H2O.8
- 4 x PYR: PYRUVIC ACID(Non-covalent)
PYR.4: 11 residues within 4Å:- Chain A: R.113, D.114, Q.117, G.151, A.152, L.184, R.186, F.219, K.283, V.446, T.447
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:V.446
- Hydrogen bonds: A:R.113, A:R.113, A:Q.117, A:T.447
- Salt bridges: A:R.113, A:R.186
PYR.9: 10 residues within 4Å:- Chain B: R.113, Q.117, G.151, A.152, L.184, R.186, F.219, K.283, V.446, T.447
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:V.446
- Hydrogen bonds: B:R.113, B:R.113, B:Q.117, B:Q.117
- Salt bridges: B:R.113, B:R.186
PYR.14: 10 residues within 4Å:- Chain C: R.113, D.114, Q.117, G.151, A.152, L.184, R.186, F.219, K.283, T.447
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:L.184
- Hydrogen bonds: C:R.113, C:R.113, C:Q.117, C:Q.117, C:T.447
- Salt bridges: C:R.113, C:R.186
PYR.18: 11 residues within 4Å:- Chain D: R.113, D.114, Q.117, G.151, A.152, L.184, R.186, F.219, K.283, V.446, T.447
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:V.446
- Hydrogen bonds: D:R.113, D:R.113, D:Q.117, D:Q.117, D:A.152
- Salt bridges: D:R.113, D:R.186
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 9 residues within 4Å:- Chain B: D.315, G.318, G.344, N.345, P.396
- Chain D: D.315, G.318, G.344, N.345
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain B- Hydrogen bonds: D:D.315, D:N.345, B:D.315, B:N.345, B:N.345
GOL.10: 7 residues within 4Å:- Chain A: D.315, G.344, N.345
- Chain C: D.315, G.318, G.344, N.345
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: C:D.315, C:N.345, C:N.345, A:D.315, A:N.345
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lietzan, A.D. et al., A Substrate-induced Biotin Binding Pocket in the Carboxyltransferase Domain of Pyruvate Carboxylase. J.Biol.Chem. (2013)
- Release Date
- 2013-05-29
- Peptides
- Pyruvate carboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.55 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x PYR: PYRUVIC ACID(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lietzan, A.D. et al., A Substrate-induced Biotin Binding Pocket in the Carboxyltransferase Domain of Pyruvate Carboxylase. J.Biol.Chem. (2013)
- Release Date
- 2013-05-29
- Peptides
- Pyruvate carboxylase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D