- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.61 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x 3PY: 3-HYDROXYPYRUVIC ACID(Non-covalent)
3PY.2: 10 residues within 4Å:- Chain A: R.113, Q.117, G.151, A.152, L.184, R.186, F.219, K.283, V.446, T.447
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:R.113, A:R.113, A:Q.117, A:Q.117, A:A.152, A:T.447
- Salt bridges: A:R.113, A:R.186
3PY.8: 11 residues within 4Å:- Chain B: R.113, D.114, Q.117, G.151, A.152, L.184, R.186, F.219, K.283, V.446, T.447
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:R.113, B:R.113, B:Q.117, B:Q.117, B:A.152
- Salt bridges: B:R.113, B:R.186
3PY.13: 10 residues within 4Å:- Chain C: R.113, Q.117, G.151, A.152, L.184, R.186, F.219, K.283, V.446, T.447
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:R.113, C:R.113, C:Q.117, C:Q.117, C:A.152, C:T.447
- Salt bridges: C:R.113, C:R.186
3PY.19: 11 residues within 4Å:- Chain D: R.113, D.114, Q.117, G.151, A.152, L.184, R.186, F.219, K.283, V.446, T.447
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:R.113, D:R.113, D:Q.117, D:Q.117, D:A.152, D:T.447
- Salt bridges: D:R.186
- 4 x BTN: BIOTIN(Non-covalent)
BTN.3: 8 residues within 4Å:- Chain A: Y.44, D.47, V.48, G.52, H.53, P.54, Y.566, R.631
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.52
BTN.9: 7 residues within 4Å:- Chain B: Y.44, D.47, V.48, G.52, P.54, Y.566, R.631
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.47
BTN.14: 7 residues within 4Å:- Chain C: Y.44, D.47, V.48, G.52, P.54, Y.566, R.631
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:Y.566
- Hydrogen bonds: C:G.52
BTN.20: 5 residues within 4Å:- Chain D: Y.44, D.47, G.52, Y.566, R.631
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:D.47
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 5 residues within 4Å:- Chain A: M.99, R.100, N.101, E.102, D.333
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:M.99, A:R.100, A:E.102, A:D.333, H2O.2
MG.10: 4 residues within 4Å:- Chain B: M.99, R.100, E.102, D.333
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:M.99, B:R.100, B:E.102, B:D.333, H2O.4
MG.15: 5 residues within 4Å:- Chain C: M.99, R.100, N.101, E.102, D.333
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:M.99, C:R.100, C:E.102, C:D.333, H2O.5
MG.21: 5 residues within 4Å:- Chain D: M.99, R.100, N.101, E.102, D.333
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:M.99, D:R.100, D:E.102, D:D.333, H2O.7
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 8 residues within 4Å:- Chain A: D.315, G.318, G.344, N.345
- Chain B: D.315, G.318, G.344, N.345
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:D.315, A:N.345, B:D.315, B:N.345, B:N.345
GOL.17: 7 residues within 4Å:- Chain C: D.315, G.318, G.344, N.345
- Chain D: D.315, G.344, N.345
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:D.315, D:N.345, D:N.345, C:D.315
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lietzan, A.D. et al., Insights into the carboxyltransferase reaction of pyruvate carboxylase from the structures of bound product and intermediate analogs. Biochem.Biophys.Res.Commun. (2013)
- Release Date
- 2013-11-13
- Peptides
- PYRUVATE CARBOXYLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.61 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 4 x 3PY: 3-HYDROXYPYRUVIC ACID(Non-covalent)
- 4 x BTN: BIOTIN(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lietzan, A.D. et al., Insights into the carboxyltransferase reaction of pyruvate carboxylase from the structures of bound product and intermediate analogs. Biochem.Biophys.Res.Commun. (2013)
- Release Date
- 2013-11-13
- Peptides
- PYRUVATE CARBOXYLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D