SMTL ID : 4jyk.1

Structure of E. coli Transcriptional Regulator RutR with bound uracil

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.85, E.86, D.87 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.86, A:D.87 Salt bridges: A:R.85 SO4.2: 4 residues within 4Å: Chain A: A.89, P.90, L.91, A.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.91, A:A.92 SO4.3: 3 residues within 4Å: Chain A: K.95, R.99, Q.202 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.202 Water bridges: A:R.99, A:R.99 Salt bridges: A:K.95, A:R.99 SO4.4: 3 residues within 4Å: Chain A: R.12, S.13, V.16 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.12, A:S.13 Water bridges: A:K.20 SO4.6: 4 residues within 4Å: Chain B: R.40, L.41, E.42, K.52 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.41, B:E.42 Salt bridges: B:K.52 SO4.7: 3 residues within 4Å: Chain B: S.51, T.53, N.54 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.51 Water bridges: B:N.54, B:N.54 SO4.8: 4 residues within 4Å: Chain B: K.95, E.96, R.99, Q.202 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.202 Water bridges: B:E.96 Salt bridges: B:K.95, B:R.99

2 x URA: URACIL(Non-covalent)

URA.5: 9 residues within 4Å: Chain A: L.74, W.77, L.78, K.101, F.115, W.167, Q.171 Chain B: F.176, Q.179 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:W.77, A:L.78 Hydrogen bonds: A:K.101, A:Q.171, A:Q.171, B:Q.179, B:Q.179 pi-Stacking: A:W.167, A:W.167 URA.9: 9 residues within 4Å: Chain A: F.176, Q.179 Chain B: L.74, W.77, L.78, K.101, F.115, W.167, Q.171 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:W.77, B:L.78 Hydrogen bonds: B:K.101, B:Q.171, B:Q.171, A:Q.179, A:Q.179 pi-Stacking: B:W.167, B:W.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cooper, D.R. et al., Structure of E. coli Transcriptional Regulator RutR with bound uracil. To be Published

Release Date

2013-08-14

Peptides

HTH-type transcriptional regulator RutR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HTH-type transcriptional regulator RutR

Related Entries With Identical Sequence