SMTL ID : 4k2j.3 (5 other biounits)

Decameric ring structure of KSHV (HHV-8) latency-associated nuclear antigen (LANA) DNA binding domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 5 residues within 4Å: Chain A: S.77, C.92, Y.94 Chain B: S.77, Y.94 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.77, B:S.77 Water bridges: A:S.77 FMT.2: 7 residues within 4Å: Chain A: Q.25, G.58, K.61, R.110, W.113, A.120, G.121 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.61, A:R.110, A:W.113 Water bridges: A:Q.25, A:R.110

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: Q.107, S.126, I.127 Chain B: K.131, K.132 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: R.39, W.45, Q.98, T.137 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain A: K.131, K.132 Chain B: Q.107, S.126, I.127 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Domsic, J.F. et al., Molecular Basis for Oligomeric-DNA Binding and Episome Maintenance by KSHV LANA. Plos Pathog. (2013)

Release Date

2013-11-06

Peptides

KSHV (HHV-8) latency-associated nuclear antigen (LANA): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

KSHV (HHV-8) latency-associated nuclear antigen (LANA)

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