SMTL ID : 4k2j.5 (5 other biounits)

Decameric ring structure of KSHV (HHV-8) latency-associated nuclear antigen (LANA) DNA binding domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 5 residues within 4Å: Chain A: P.75, S.77, Y.94 Chain B: S.77, Y.94 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.77, A:S.77 Water bridges: A:S.77

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: Q.107, S.126, I.127 Chain B: K.131, K.132 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: K.131, K.132 Chain B: Q.107, S.126, I.127 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain B: R.39, P.41, W.45, Q.98, T.137 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain B: G.58, K.61, R.110, A.120, G.121 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Domsic, J.F. et al., Molecular Basis for Oligomeric-DNA Binding and Episome Maintenance by KSHV LANA. Plos Pathog. (2013)

Release Date

2013-11-06

Peptides

KSHV (HHV-8) latency-associated nuclear antigen (LANA): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

KSHV (HHV-8) latency-associated nuclear antigen (LANA)

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