- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x LEU: LEUCINE(Non-covalent)
- 2 x PHE: PHENYLALANINE(Non-covalent)
PHE.2: 7 residues within 4Å:- Chain A: R.152, L.155, T.172, G.174, P.242
- Ligands: LEU.1, ACE.9
8 PLIP interactions:5 interactions with chain A, 3 Ligand-Ligand interactions- Hydrophobic interactions: A:L.155, A:T.172, A:P.242, A:P.242, L.1
- Water bridges: A:R.152
- Hydrogen bonds: F.2, F.2
PHE.11: 6 residues within 4Å:- Chain B: L.155, T.172, G.174, P.242
- Ligands: LEU.10, ACE.24
8 PLIP interactions:4 interactions with chain B, 4 Ligand-Ligand interactions- Hydrophobic interactions: B:L.155, B:T.172, B:P.242, B:P.242, L.10
- Hydrogen bonds: L.10, F.11, F.11
- 12 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.3: 4 residues within 4Å:- Chain A: V.5, E.6, H.9, Q.61
No protein-ligand interaction detected (PLIP)CA.4: 3 residues within 4Å:- Chain A: S.181, Q.355, S.356
No protein-ligand interaction detected (PLIP)CA.7: 1 residues within 4Å:- Chain B: R.105
No protein-ligand interaction detected (PLIP)CA.8: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.12: 2 residues within 4Å:- Chain B: E.163, E.166
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:E.163, B:E.166, H2O.19, H2O.21, H2O.27
CA.13: 7 residues within 4Å:- Chain B: P.249, P.252, M.339, L.340, T.341, S.346, V.347
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:M.339, B:T.341, B:S.346
CA.14: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)CA.15: 3 residues within 4Å:- Chain B: G.46, T.47, E.202
No protein-ligand interaction detected (PLIP)CA.20: 1 residues within 4Å:- Chain B: V.344
No protein-ligand interaction detected (PLIP)CA.21: 3 residues within 4Å:- Chain B: V.126, E.127, P.189
No protein-ligand interaction detected (PLIP)CA.22: 1 residues within 4Å:- Chain B: P.83
No protein-ligand interaction detected (PLIP)CA.26: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- 5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.5: 5 residues within 4Å:- Chain A: N.275, R.282, N.295, N.296, P.297
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.275, A:R.282, A:N.295
- Water bridges: A:G.280, A:N.295, A:N.295
PEG.6: 5 residues within 4Å:- Chain A: D.121, W.122, S.124, Q.217, R.224
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.217, A:R.224, A:R.224
- Water bridges: A:S.124
PEG.16: 4 residues within 4Å:- Chain B: D.121, W.122, Q.217, R.224
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.224, B:R.224
- Water bridges: B:S.124
PEG.17: 2 residues within 4Å:- Chain B: P.131, A.133
No protein-ligand interaction detected (PLIP)PEG.19: 3 residues within 4Å:- Chain B: S.187, L.188, P.189
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:S.187
- 2 x ACE: ACETYL GROUP(Non-functional Binders)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yin, Z. et al., Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp. J.Med.Chem. (2013)
- Release Date
- 2013-05-01
- Peptides
- DNA polymerase III subunit beta: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x LEU: LEUCINE(Non-covalent)
- 2 x PHE: PHENYLALANINE(Non-covalent)
- 12 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x ACE: ACETYL GROUP(Non-functional Binders)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yin, Z. et al., Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp. J.Med.Chem. (2013)
- Release Date
- 2013-05-01
- Peptides
- DNA polymerase III subunit beta: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B