SMTL ID : 4k3s.1

E. coli sliding clamp in P1 crystal space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: E.6, G.85, E.87 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.6, A:E.6, A:G.85

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 7 residues within 4Å: Chain B: S.18, L.21, G.22, G.23, R.73, F.76, R.80 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.18, B:R.73, B:R.73, B:R.80

1 x P4C: O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL(Non-covalent)

P4C.3: 10 residues within 4Å: Chain A: Q.265, A.268 Chain B: R.7, L.11, Q.15, F.76, R.80, G.81, L.82, E.84 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.7, B:R.7, B:Q.15, B:E.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, Z. et al., Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp. J.Med.Chem. (2013)

Release Date

2013-05-01

Peptides

DNA polymerase III subunit beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA polymerase III subunit beta

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