SMTL ID : 4k4e.2 (1 other biounit)

Co-crystal structure of tnks1 with compound 52 [N~2-(5-chloro-2-methoxyphenyl)-N-[trans-4-(2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)cyclohexyl]glycinamide]

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.131, H.134, C.139, C.142 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.131, A:H.134, A:C.139, A:C.142

1 x K4E: N~2~-(5-chloro-2-methoxyphenyl)-N-[trans-4-(2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)cyclohexyl]glycinamide(Non-covalent)

K4E.2: 18 residues within 4Å: Chain A: H.81, S.83, P.84, F.85, A.88, I.89, G.93, F.94, D.95, H.98, A.99, Y.100, G.108, I.109, Y.110, Y.121, G.124, I.125 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.85, A:F.85, A:F.85, A:F.85, A:A.88 Hydrogen bonds: A:G.93, A:D.95, A:Y.100, A:Y.110 Water bridges: A:G.108 pi-Stacking: A:H.98 Halogen bonds: A:Y.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bregman, H. et al., Discovery of novel, induced-pocket binding oxazolidinones as potent, selective, and orally bioavailable tankyrase inhibitors. J.Med.Chem. (2013)

Release Date

2013-06-05

Peptides

Tankyrase-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Tankyrase-1

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