SMTL ID : 4k7i.4 (4 other biounits)

HUMAN PEROXIREDOXIN 5 with a fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x CAQ: CATECHOL(Non-covalent)

CAQ.1: 8 residues within 4Å: Chain A: P.47, T.51, P.52, G.53, C.54, F.127, R.134, T.154 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.47, A:F.127, A:T.154 Hydrogen bonds: A:G.53, A:C.54, A:R.134 CAQ.3: 8 residues within 4Å: Chain B: P.47, T.51, P.52, G.53, C.54, F.127, R.134, T.154 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:P.47, B:F.127, B:T.154 Hydrogen bonds: B:T.51, B:G.53, B:C.54, B:R.134

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: F.50, S.55, W.91, H.95 Chain B: E.90 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:E.90 DMS.4: 5 residues within 4Å: Chain A: E.90 Chain B: F.50, S.55, W.91, H.95 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aguirre, C. et al., Comparing Binding Modes of Analogous Fragments Using NMR in Fragment-Based Drug Design: Application to PRDX5. Plos One (2014)

Release Date

2014-04-23

Peptides

Peroxiredoxin-5, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Peroxiredoxin-5, mitochondrial

Related Entries With Identical Sequence