SMTL ID : 4mmm.5 (5 other biounits)

Human Pdrx5 complex with a ligand BP7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

homo-dimer

Ligands

1 x BP7: 1,1'-BIPHENYL-3,4-DIOL(Non-covalent)

BP7.1: 9 residues within 4Å: Chain A: T.51, P.52, G.53, C.54, I.126, F.127, R.134 Chain B: P.26, F.86 10 PLIP interactions: 7 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:T.51, A:I.126, A:F.127, B:P.26, B:F.86, B:F.86 Hydrogen bonds: A:G.53, A:C.54, A:R.134 Water bridges: A:T.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aguirre, C. et al., Comparing Binding Modes of Analogous Fragments Using NMR in Fragment-Based Drug Design: Application to PRDX5. Plos One (2014)

Release Date

2014-07-30

Peptides

Peroxiredoxin-5, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Peroxiredoxin-5, mitochondrial

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