SMTL ID : 4kf1.2 (1 other biounit)

Crystal structure of SsoPox W263I in complex with C10HTL

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 6 residues within 4Å: Chain A: K.137, H.170, H.199, R.223 Ligands: FE2.2, HT5.3 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.170, A:H.199, H2O.11 CO.9: 6 residues within 4Å: Chain B: K.137, H.170, H.199, R.223 Ligands: FE2.10, HT5.11 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.170, B:H.199, H2O.20

2 x FE2: FE (II) ION(Non-covalent)

FE2.2: 6 residues within 4Å: Chain A: H.22, H.24, K.137, D.256 Ligands: CO.1, HT5.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.22, A:H.24, A:D.256, H2O.11 FE2.10: 6 residues within 4Å: Chain B: H.22, H.24, K.137, D.256 Ligands: CO.9, HT5.11 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.22, B:H.24, B:D.256, H2O.20

2 x HT5: (4S)-4-(decanoylamino)-5-hydroxy-3,4-dihydro-2H-thiophenium(Non-covalent)

HT5.3: 18 residues within 4Å: Chain A: H.24, Y.97, Y.99, K.137, H.170, H.199, R.223, L.226, D.256, C.258, T.265, A.266, K.271, A.275, W.278 Ligands: CO.1, FE2.2, PG4.4 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.226, A:T.265, A:K.271, A:A.275, A:W.278 Hydrogen bonds: A:R.223 Water bridges: A:R.223 HT5.11: 18 residues within 4Å: Chain B: H.24, Y.97, Y.99, K.137, H.170, H.199, R.223, L.226, D.256, C.258, T.265, A.266, K.271, A.275, W.278 Ligands: CO.9, FE2.10, PG4.12 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.226, B:L.226, B:A.266, B:K.271, B:A.275, B:W.278, B:W.278 Hydrogen bonds: B:R.223 Water bridges: B:R.223

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.4: 5 residues within 4Å: Chain A: L.72, Y.97, Y.99, F.229 Ligands: HT5.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.99 PG4.12: 5 residues within 4Å: Chain B: L.72, Y.97, Y.99, L.228 Ligands: HT5.11 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.97, B:Y.99

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: N.160, K.164, G.189, V.190, D.191, K.194 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.160, A:K.164, A:D.191 Water bridges: A:G.189 GOL.8: 7 residues within 4Å: Chain A: S.171, N.172, A.173, H.174, H.199, D.202, F.229 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.172, A:A.173, A:H.199 Water bridges: A:D.141, A:R.223, A:R.223 GOL.13: 2 residues within 4Å: Chain B: E.12, D.15 No protein-ligand interaction detected (PLIP) GOL.14: 6 residues within 4Å: Chain B: N.160, K.164, G.189, V.190, D.191, K.194 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.160, B:K.164, B:D.191 Water bridges: A:R.77, A:R.77 GOL.15: 4 residues within 4Å: Chain B: I.98, Y.99, I.100, D.101 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.99, B:I.100, B:D.101, B:D.101 GOL.17: 7 residues within 4Å: Chain B: S.171, N.172, A.173, H.174, D.202, R.223, F.229 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.141, B:A.173, B:H.199, B:R.223 Water bridges: B:N.172 GOL.19: 5 residues within 4Å: Chain B: L.5, G.7, K.8, L.130, N.131 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.8, B:N.131 Water bridges: B:L.5, B:K.8, B:K.8

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 8 residues within 4Å: Chain A: P.4, L.5, K.8, D.9, S.10, L.130, N.131, K.132 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.5, A:D.9, A:L.130, A:K.132 Water bridges: A:S.10, A:N.131 EDO.7: 7 residues within 4Å: Chain A: H.120, E.124, G.125, I.126, Q.127, G.128, T.129 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.128 Water bridges: A:H.120 EDO.16: 6 residues within 4Å: Chain B: A.213, D.214, G.246, Y.247, D.249, K.250 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.214, B:D.214, B:D.249 EDO.18: 4 residues within 4Å: Chain B: R.33, P.37, Y.40, E.42 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.33, B:R.33, B:Y.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hiblot, J. et al., Differential Active Site Loop Conformations Mediate Promiscuous Activities in the Lactonase SsoPox. Plos One (2013)

Release Date

2013-10-02

Peptides

Aryldialkylphosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Aryldialkylphosphatase

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