SMTL ID : 4kqv.1 (1 other biounit)

Topoisomerase iv atp binding domain of francisella tularensis in complex with a small molecule inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

monomer

Ligands

6 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: N.32, Q.36, A.182, L.183 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: R.21, G.23 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: L.12, K.92 Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain A: D.68 Ligand excluded by PLIP IOD.6: 6 residues within 4Å: Chain A: S.202, N.203, E.204, K.207, E.208, K.209 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain A: P.74 Ligands: DOO.3 Ligand excluded by PLIP

1 x DOO: 6-fluoro-4-[(3aR,6aR)-hexahydropyrrolo[3,4-b]pyrrol-5(1H)-yl]-N-methyl-2-[(2-methylpyrimidin-5-yl)oxy]-9H-pyrimido[4,5-b]indol-8-amine(Non-covalent)

DOO.3: 16 residues within 4Å: Chain A: I.38, N.41, S.42, E.45, V.66, D.68, R.71, G.72, M.73, P.74, I.89, V.115, R.131, T.162, I.164 Ligands: IOD.7 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.38, A:N.41, A:I.89, A:I.164 Hydrogen bonds: A:D.68, A:D.68, A:G.72, A:R.131 Water bridges: A:E.45, A:E.45, A:T.162, A:T.162 pi-Cation interactions: A:R.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tari, L.W. et al., A new class of type iia topoisomerase inhibitors with broad-spectrum antibacterial activity. To be Published

Release Date

2014-01-15

Peptides

Topoisomerase IV, subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Topoisomerase IV, subunit B

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